RLG00000009427
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
52673710 .. 52678419
4710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009427

Sequence Viewer

Length: 921 bp
ATGGTAGCAGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGCTTGCATGGCCTGACGATATCAATTCTGGAGAGGATACAGAATCGAACCAAGGAGAAGAAGATGTCTACACAAACTGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGCGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGGGATGTAAGGCCGCACCTTTTCTCAAGGGACTATTTCACTTGCGTCGACTGCTTCCACCATAACAAAAATGGAACTTTCGATCTCTGCACCTCTTGCTACCACAATGCAGACTTTGATCATGAACACACAGACTTTGTGGATAACCGTGTGTTACTTCGTTCCAAGGCTGCTTGTTGTGAATCCACATCTGAGCCATGCCCTCCTGGGTCTGATTCTGAGTCCAATCAAGTCAGTCGAACTGGATCAAAGAGGCATCATGTGATTGATCCACAACTATCTGTGACAGTTTCATCGGATTTCAATACGCATGATGCATCTTGGTTTGAATTAAAGCGTGGAGAGAATAAGGATCGTTGTTAA

Protein Analysis

307

Amino Acids

34.19

Weight (kDa)

4.85

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 41 - 187 1.9e-48 Kinesin motor domain
Microtub_bd PF16796 45 - 130 6.8e-16 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AccI GTMKAC 2 cut(s) 144, 606
AccII CGCG 1 cut(s) 269
AciI CCGC 2 cut(s) 267, 572
AclWI GGATC 7 cut(s) 257, 419, 432, 481, 811, 821, 918
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 6 cut(s) 338, 359, 392, 494, 862, 887
AjnI CCWGG 2 cut(s) 48, 763
AluBI AGCT 6 cut(s) 31, 43, 64, 79, 324, 479
AluI AGCT 6 cut(s) 31, 43, 64, 79, 324, 479
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 7 cut(s) 257, 419, 432, 481, 811, 821, 918
Ama87I CYCGRG 1 cut(s) 558
AoxI GGCC 4 cut(s) 86, 403, 451, 569
ApeKI GCWGC 2 cut(s) 40, 728
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 558
AxyI CCTNAGG 1 cut(s) 455
BamHI GGATCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 52, 715
BciT130I CCWGG 2 cut(s) 50, 765
BciVI GTATCC 1 cut(s) 106
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 353
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 3 cut(s) 41, 572, 729
BlsI GCNGC 3 cut(s) 42, 573, 730
Bme1390I CCNGG 2 cut(s) 50, 765
BmeT110I CYCGRG 1 cut(s) 558
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 2 cut(s) 50, 765
BmsI GCATC 3 cut(s) 823, 862, 884
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 54, 568
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 127, 723, 764
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 805
Bse21I CCTNAGG 1 cut(s) 455
BseBI CCWGG 2 cut(s) 50, 765
BseDI CCNNGG 3 cut(s) 127, 723, 764
BseGI GGATG 2 cut(s) 398, 568
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 5 cut(s) 295, 430, 469, 741, 768
BseNI ACTGG 1 cut(s) 805
BseXI GCAGC 2 cut(s) 52, 715
BsgI GTGCAG 1 cut(s) 631
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 4 cut(s) 88, 405, 453, 571
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 2 cut(s) 222, 402
BslFI GGGAC 2 cut(s) 265, 602
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 265, 602
BsnI GGCC 4 cut(s) 88, 405, 453, 571
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 326
BspACI CCGC 2 cut(s) 267, 572
BspANI GGCC 4 cut(s) 88, 405, 453, 571
BspCNI CTCAG 5 cut(s) 294, 429, 468, 742, 769
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 7 cut(s) 257, 419, 432, 481, 811, 821, 918
BspQI GCTCTTC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 805
BssECI CCNNGG 3 cut(s) 127, 723, 764
BssT1I CCWWGG 2 cut(s) 127, 723
Bst2UI CCWGG 2 cut(s) 50, 765
Bst4CI ACNGT 3 cut(s) 202, 707, 847
Bst6I CTCTTC 1 cut(s) 21
BstAPI GCANNNNNTGC 2 cut(s) 80, 654
BstC8I GCNNGC 2 cut(s) 81, 451
BstDEI CTNAG 5 cut(s) 281, 416, 455, 750, 777
BstF5I GGATG 2 cut(s) 398, 568
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 5 cut(s) 37, 80, 85, 609, 654
BstNI CCWGG 2 cut(s) 50, 765
BstSCI CCNGG 2 cut(s) 48, 763
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 52, 715
BstX2I RGATCY 2 cut(s) 424, 486
BstYI RGATCY 2 cut(s) 424, 486
Bsu36I CCTNAGG 1 cut(s) 455
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 4 cut(s) 88, 405, 453, 571
BtsCI GGATG 2 cut(s) 398, 568
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 81, 451
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 271
CseI GACGC 1 cut(s) 592
CviAII CATG 7 cut(s) 84, 185, 274, 680, 756, 818, 869
DdeI CTNAG 5 cut(s) 281, 416, 455, 750, 777
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 127, 723
Eco24I GRGCYC 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 48, 763
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 127, 723
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 2 cut(s) 127, 723
FaeI CATG 7 cut(s) 87, 188, 277, 683, 759, 821, 872
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 2 cut(s) 265, 602
FatI CATG 7 cut(s) 83, 184, 273, 679, 755, 817, 868
FauI CCCGC 1 cut(s) 274
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 2 cut(s) 144, 606
Fnu4HI GCNGC 3 cut(s) 41, 572, 729
FokI GGATG 2 cut(s) 385, 575
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 41, 572, 729
GlaI GCGC 1 cut(s) 270
GluI GCNGC 3 cut(s) 41, 572, 729
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 4 cut(s) 88, 405, 453, 571
HapII CCGG 2 cut(s) 222, 402
HgaI GACGC 1 cut(s) 592
HhaI GCGC 1 cut(s) 271
Hin1II CATG 7 cut(s) 87, 188, 277, 683, 759, 821, 872
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 5 cut(s) 119, 438, 740, 773, 779
HpaII CCGG 2 cut(s) 222, 402
Hpy166II GTNNAC 2 cut(s) 145, 607
Hpy188I TCNGA 7 cut(s) 306, 328, 419, 751, 772, 778, 856
Hpy188III TCNNGA 5 cut(s) 105, 356, 428, 560, 680
Hpy8I GTNNAC 2 cut(s) 145, 607
Hpy99I CGWCG 2 cut(s) 522, 608
HpyCH4III ACNGT 3 cut(s) 202, 707, 847
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 9 cut(s) 16, 83, 156, 197, 289, 548, 648, 668, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 80, 85, 609, 654
HpyF3I CTNAG 5 cut(s) 281, 416, 455, 750, 777
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 7 cut(s) 87, 188, 277, 683, 759, 821, 872
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 676
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 52, 715
LweI GCATC 3 cut(s) 823, 862, 884
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 340, 711, 841
MboII GAAGA 4 cut(s) 38, 146, 149, 546
MflI RGATCY 2 cut(s) 424, 486
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 3 cut(s) 100, 332, 887
MlyI GAGTC 1 cut(s) 788
MnlI CCTC 8 cut(s) 4, 103, 415, 464, 532, 661, 771, 804
Mph1103I ATGCAT 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 500, 890, 919
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 222, 402
MspR9I CCNGG 2 cut(s) 50, 765
MvaI CCWGG 2 cut(s) 50, 765
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 5 cut(s) 37, 80, 85, 609, 654
NlaIII CATG 7 cut(s) 87, 188, 277, 683, 759, 821, 872
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 877
PagI TCATGA 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 4 cut(s) 119, 438, 740, 773
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 3 cut(s) 42, 573, 730
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 48, 763
PspGI CCWGG 2 cut(s) 48, 763
PspN4I GGNNCC 1 cut(s) 426
PsuI RGATCY 2 cut(s) 424, 486
PvuII CAGCTG 1 cut(s) 479
SacI GAGCTC 1 cut(s) 326
SalI GTCGAC 1 cut(s) 605
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 3 cut(s) 500, 890, 919
SatI GCNGC 3 cut(s) 41, 572, 729
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 2 cut(s) 50, 765
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 3 cut(s) 823, 862, 884
SmlI CTYRAG 2 cut(s) 69, 583
SmoI CTYRAG 2 cut(s) 69, 583
Sse9I AATT 3 cut(s) 100, 332, 887
SsiI CCGC 2 cut(s) 267, 572
SspI AATATT 1 cut(s) 297
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 48, 763
StyI CCWWGG 2 cut(s) 127, 723
TaaI ACNGT 3 cut(s) 202, 707, 847
TaiI ACGT 1 cut(s) 507
TaqI TCGA 4 cut(s) 122, 606, 639, 796
TasI AATT 3 cut(s) 100, 332, 887
TauI GCSGC 1 cut(s) 574
TfiI GAWTC 4 cut(s) 119, 438, 740, 773
Tru1I TTAA 3 cut(s) 500, 890, 919
Tru9I TTAA 3 cut(s) 500, 890, 919
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 2 cut(s) 40, 728
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 4 cut(s) 173, 345, 696, 840
TspGWI ACGGA 3 cut(s) 154, 535, 551
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmiI GTMKAC 2 cut(s) 144, 606
XmnI GAANNNNTTC 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.