Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

76274438 .. 76277380

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG585300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAATTCTCAACTCTAAAAAGTGACAAGGTTCTGAGCAAGAAGCCCCCTACTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAAGGAGCCAACGAGAGAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGAGAAGATTGAGGTGCAATTGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGACAATGAGTTGGTTCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCAAGCCAGAGTCTAAGCTTTCATTTATCATTCGTATCCATGGGTACTATACACTAGTTACCTTTGGAAATATTGATGGTTACCTGCATCTAAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

169

Amino Acids

19.43

Weight (kDa)

10.11

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	69
Acc36I	ACCTGC	2 cut(s)	69, 501
AcsI	RAATTY	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	172, 376
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	154, 324
AluBI	AGCT	6 cut(s)	124, 134, 307, 319, 340, 427
AluI	AGCT	6 cut(s)	124, 134, 307, 319, 340, 427
Alw21I	GWGCWC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	134, 316
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	184, 212
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	184, 212
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	121, 328
BccI	CCATC	2 cut(s)	236, 479
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	156, 326
BciVI	GTATCC	1 cut(s)	455
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	1 cut(s)	464
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	2 cut(s)	69, 501
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	2 cut(s)	135, 317
BlsI	GCNGC	2 cut(s)	136, 318
Bme1390I	CCNGG	2 cut(s)	156, 326
Bme18I	GGWCC	2 cut(s)	184, 212
BmgT120I	GGNCC	2 cut(s)	184, 212
BmiI	GGNNCC	4 cut(s)	106, 186, 213, 214
BmrFI	CCNGG	2 cut(s)	156, 326
BmsI	GCATC	2 cut(s)	79, 505
BpiI	GAAGAC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	154, 163, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	156, 326
BseDI	CCNNGG	3 cut(s)	154, 163, 448
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	26, 214, 221
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	121, 328
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	448
BspCNI	CTCAG	3 cut(s)	27, 213, 220
BspLI	GGNNCC	4 cut(s)	106, 186, 213, 214
BspMI	ACCTGC	2 cut(s)	69, 501
BspQI	GCTCTTC	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	3 cut(s)	154, 163, 448
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	2 cut(s)	156, 326
Bst6I	CTCTTC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	5 cut(s)	35, 200, 207, 423, 500
BstDSI	CCRYGG	2 cut(s)	163, 448
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 134, 313
BstNI	CCWGG	2 cut(s)	156, 326
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	154, 324
BstV1I	GCAGC	2 cut(s)	121, 328
BstV2I	GAAGAC	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	455
BtgI	CCRYGG	2 cut(s)	163, 448
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	208, 253
BveI	ACCTGC	2 cut(s)	69, 501
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	184, 212
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	1 cut(s)	449
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	5 cut(s)	35, 200, 207, 423, 500
DraIII	CACNNNGTG	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	184, 212
Eco91I	GGTNACC	1 cut(s)	488
EcoO109I	RGGNCCY	2 cut(s)	184, 212
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	154, 324
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	1 cut(s)	452
FaiI	YATR	7 cut(s)	258, 334, 336, 408, 450, 459, 508
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	135, 317
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	135, 317
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	2 cut(s)	135, 317
Hin1II	CATG	1 cut(s)	452
HindIII	AAGCTT	2 cut(s)	122, 425
HinfI	GANTC	3 cut(s)	168, 402, 419
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	92, 137, 292, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 134, 313
HpyF3I	CTNAG	5 cut(s)	35, 200, 207, 423, 500
Hsp92II	CATG	1 cut(s)	452
KflI	GGGWCCC	1 cut(s)	212
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	9 cut(s)	74, 87, 141, 168, 194, 311, 338, 429, 506
Lsp1109I	GCAGC	2 cut(s)	121, 328
LweI	GCATC	2 cut(s)	79, 505
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	6 cut(s)	23, 143, 195, 248, 466, 488
MboII	GAAGA	3 cut(s)	237, 292, 314
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	5, 293
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	66, 280, 392
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	120, 192
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	156, 326
MunI	CAATTG	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	156, 326
MwoI	GCNNNNNNNGC	3 cut(s)	70, 134, 313
NcoI	CCATGG	1 cut(s)	448
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	4 cut(s)	106, 186, 213, 214
NmuCI	GTSAC	3 cut(s)	23, 195, 248
PaqCI	CACCTGC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	168, 402
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	136, 318
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PpuMI	RGGWCCY	2 cut(s)	184, 212
Psp5II	RGGWCCY	2 cut(s)	184, 212
Psp6I	CCWGG	2 cut(s)	154, 324
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	154, 324
PspN4I	GGNNCC	4 cut(s)	106, 186, 213, 214
PspPI	GGNCC	2 cut(s)	184, 212
PspPPI	RGGWCCY	2 cut(s)	184, 212
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	120, 192
SatI	GCNGC	2 cut(s)	135, 317
Sau96I	GGNCC	2 cut(s)	184, 212
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	156, 326
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	79, 505
SinI	GGWCC	2 cut(s)	184, 212
SmlI	CTYRAG	2 cut(s)	191, 345
SmoI	CTYRAG	2 cut(s)	191, 345
SpeI	ACTAGT	1 cut(s)	463
Sse9I	AATT	2 cut(s)	5, 293
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	154, 324
StyI	CCWWGG	1 cut(s)	448
TasI	AATT	2 cut(s)	5, 293
TfiI	GAWTC	2 cut(s)	168, 402
Tru1I	TTAA	2 cut(s)	120, 192
Tru9I	TTAA	2 cut(s)	120, 192
TscAI	CASTG	2 cut(s)	208, 253
TseFI	GTSAC	3 cut(s)	23, 195, 248
TseI	GCWGC	2 cut(s)	134, 316
Tsp45I	GTSAC	3 cut(s)	23, 195, 248
TspDTI	ATGAA	2 cut(s)	17, 420
TspRI	CASTG	2 cut(s)	208, 253
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	184, 212
XapI	RAATTY	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.