Rh7DG421500

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000528
Physical Location & Seq
Reverse (-)
59488847 .. 59501126
12280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG421500.1

Sequence Viewer

Length: 771 bp
ATGACTTGCTTCTTCTCAAAGGGGTCTATTCTAATCATTCTCCTTTTAGCAATTTGCCTAGTTAGTGAAGCTCAGCAATGTCGTCCAAGCGGAAGGATTAGAGGAAAGAAGCCTCCTCCTGGACAATGTAACCGGGAAGATGACTCTGACTGCTGCAAAGCTGGAAAAATGTACCCAACATACACATGCTCACCACCAATGTCAGGTAACACCCAGGCATACCTCACTCTCAACAGCTTTGAGGCAGGCGGTGACGGAGGAGGCCCATCAGAATGTGATGGCAAGTACCACAATGACAACACTCCAGTTGTGGCATTATCTACCGGATGGTATAATGGTGGATCACGATGCCTTAACAACATCAGAATTCATGGTAATGGGCGCAGTGTGGTGGCCATGGTGGTGGATGAGTGTGACTCGACTGAGGGATGTGATGCGGGCCATGATTATCAGCCTCCTTGTCCCAACAATATTGTTGATGCATCGAAGGCTGTCTGGAAAGCCTTAGTGAGGGATCAAAGAGATTTCAACACTGCGTTTCTGGAGCGCAAGGAGGCTGCGAATCGTCTTGTGGTGGAAGAAGCCATCGACTATTGCAACTCGATCTTCGTGCTTCATCCCGAGACCATGGAGAAGCTCCAGCGACAACACAATCAGGACAAAGATCTTAGAAGCCTTCAAAACAAGTCGGGACATAAATACTGTATTCTTGTCAAAGGTGTACATGGCATGCATTTGACAAGGTCATCTAGTGAGAGCTTCTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.18

Weight (kDa)

6.69

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 16 - 175 3e-62 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 90, 249, 437
AclWI GGATC 2 cut(s) 349, 522
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 366
AfaI GTAC 3 cut(s) 173, 287, 723
AfiI CCNNNNNNNGG 3 cut(s) 119, 203, 510
AgsI TTSAA 2 cut(s) 529, 680
AjnI CCWGG 2 cut(s) 118, 213
AluBI AGCT 5 cut(s) 71, 161, 237, 637, 759
AluI AGCT 5 cut(s) 71, 161, 237, 637, 759
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 349, 522
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 3 cut(s) 262, 393, 439
ApeKI GCWGC 2 cut(s) 153, 557
ApoI RAATTY 1 cut(s) 366
AspLEI GCGC 2 cut(s) 384, 549
AspS9I GGNCC 2 cut(s) 263, 439
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 183, 263
AvaI CYCGRG 1 cut(s) 620
BalI TGGCCA 1 cut(s) 395
BbvI GCAGC 2 cut(s) 140, 544
BccI CCATC 4 cut(s) 272, 274, 321, 593
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 2 cut(s) 120, 215
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 59, 750
BglII AGATCT 1 cut(s) 664
BisI GCNGC 2 cut(s) 154, 558
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 2 cut(s) 155, 559
Bme1390I CCNGG 3 cut(s) 120, 134, 215
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 263, 439
BmrFI CCNGG 3 cut(s) 120, 134, 215
BmsI GCATC 4 cut(s) 338, 424, 469, 491
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 3 cut(s) 288, 563, 623
Bpu1102I GCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 213, 396, 627
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 203, 510
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 120, 215
BseDI CCNNGG 3 cut(s) 213, 396, 627
BseGI GGATG 4 cut(s) 332, 412, 434, 616
BseLI CCNNNNNNNGG 3 cut(s) 119, 203, 510
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 86, 414
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 105, 273
BseXI GCAGC 2 cut(s) 140, 544
BshFI GGCC 3 cut(s) 264, 395, 441
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 133, 324
BslFI GGGAC 2 cut(s) 447, 705
BslI CCNNNNNNNGG 3 cut(s) 119, 203, 510
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 447, 705
BsnI GGCC 3 cut(s) 264, 395, 441
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 721
Bsp143I GATC 4 cut(s) 341, 514, 603, 664
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 2 cut(s) 396, 627
BspACI CCGC 3 cut(s) 90, 249, 437
BspANI GGCC 3 cut(s) 264, 395, 441
BspCNI CTCAG 2 cut(s) 85, 415
BspPI GGATC 2 cut(s) 349, 522
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 721
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 213, 396, 627
BssMI GATC 4 cut(s) 341, 514, 603, 664
BssT1I CCWWGG 2 cut(s) 396, 627
Bst2UI CCWGG 2 cut(s) 120, 215
Bst4CI ACNGT 1 cut(s) 704
BstAUI TGTACA 1 cut(s) 721
BstC8I GCNNGC 3 cut(s) 247, 439, 731
BstDEI CTNAG 4 cut(s) 72, 423, 505, 668
BstDSI CCRYGG 2 cut(s) 396, 627
BstENI CCTNNNNNAGG 1 cut(s) 508
BstF5I GGATG 4 cut(s) 332, 412, 434, 616
BstHHI GCGC 2 cut(s) 384, 549
BstKTI GATC 4 cut(s) 344, 517, 606, 667
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 341, 514, 603, 664
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 120, 215
BstNSI RCATGY 2 cut(s) 189, 733
BstSCI CCNGG 3 cut(s) 118, 132, 213
BstV1I GCAGC 2 cut(s) 140, 544
BstX2I RGATCY 1 cut(s) 664
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 3 cut(s) 264, 395, 441
BtgI CCRYGG 2 cut(s) 396, 627
BtsCI GGATG 4 cut(s) 332, 412, 434, 616
BtsI GCAGTG 2 cut(s) 391, 531
BtsIMutI CAGTG 2 cut(s) 391, 531
Cac8I GCNNGC 3 cut(s) 247, 439, 731
CfoI GCGC 2 cut(s) 384, 549
Cfr13I GGNCC 2 cut(s) 263, 439
Csp6I GTAC 3 cut(s) 172, 286, 722
CviAII CATG 7 cut(s) 186, 371, 397, 443, 628, 725, 730
CviQI GTAC 3 cut(s) 172, 286, 722
DdeI CTNAG 4 cut(s) 72, 423, 505, 668
DpnI GATC 4 cut(s) 343, 516, 605, 666
DpnII GATC 4 cut(s) 341, 514, 603, 664
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 396, 627
Eco31I GGTCTC 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 118, 213
EcoT14I CCWWGG 2 cut(s) 396, 627
EcoT22I ATGCAT 2 cut(s) 484, 735
ErhI CCWWGG 2 cut(s) 396, 627
FaeI CATG 7 cut(s) 189, 374, 400, 446, 631, 728, 733
FaqI GGGAC 2 cut(s) 447, 705
FatI CATG 7 cut(s) 185, 370, 396, 442, 627, 724, 729
FauI CCCGC 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 154, 558
FokI GGATG 4 cut(s) 339, 419, 441, 603
Fsp4HI GCNGC 2 cut(s) 154, 558
FspBI CTAG 2 cut(s) 59, 750
GlaI GCGC 2 cut(s) 383, 548
GluI GCNGC 2 cut(s) 154, 558
GsuI CTGGAG 3 cut(s) 288, 563, 623
HaeIII GGCC 3 cut(s) 264, 395, 441
HapII CCGG 2 cut(s) 133, 324
HhaI GCGC 2 cut(s) 384, 549
Hin1II CATG 7 cut(s) 189, 374, 400, 446, 631, 728, 733
Hin6I GCGC 2 cut(s) 382, 547
HinP1I GCGC 2 cut(s) 382, 547
HinfI GANTC 3 cut(s) 143, 416, 562
HpaII CCGG 2 cut(s) 133, 324
HphI GGTGA 2 cut(s) 183, 263
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 3 cut(s) 148, 271, 365
Hpy188III TCNNGA 6 cut(s) 345, 496, 542, 620, 656, 690
Hpy8I GTNNAC 1 cut(s) 722
HpyAV CCTTC 3 cut(s) 87, 481, 686
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4V TGCA 4 cut(s) 156, 482, 597, 733
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 4 cut(s) 72, 423, 505, 668
Hsp92II CATG 7 cut(s) 189, 374, 400, 446, 631, 728, 733
HspAI GCGC 2 cut(s) 382, 547
Kzo9I GATC 4 cut(s) 341, 514, 603, 664
LmnI GCTCC 2 cut(s) 544, 642
Lsp1109I GCAGC 2 cut(s) 140, 544
LweI GCATC 4 cut(s) 338, 424, 469, 491
MaeI CTAG 2 cut(s) 59, 750
MaeIII GTNAC 4 cut(s) 128, 206, 251, 413
MalI GATC 4 cut(s) 343, 516, 605, 666
MboI GATC 4 cut(s) 341, 514, 603, 664
MboII GAAGA 4 cut(s) 4, 149, 590, 598
MflI RGATCY 1 cut(s) 664
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 51, 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 137, 410
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 2 cut(s) 484, 735
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 4 cut(s) 184, 271, 375, 401
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 2 cut(s) 133, 324
MspR9I CCNGG 3 cut(s) 120, 134, 215
MvaI CCWGG 2 cut(s) 120, 215
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 2 cut(s) 396, 627
NdeII GATC 4 cut(s) 341, 514, 603, 664
NlaIII CATG 7 cut(s) 189, 374, 400, 446, 631, 728, 733
NmuCI GTSAC 2 cut(s) 251, 413
NsiI ATGCAT 2 cut(s) 484, 735
NspI RCATGY 2 cut(s) 189, 733
PaeI GCATGC 1 cut(s) 733
PfeI GAWTC 1 cut(s) 562
PflFI GACNNNGTC 1 cut(s) 742
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 2 cut(s) 155, 559
PleI GAGTC 2 cut(s) 137, 410
PpsI GAGTC 2 cut(s) 137, 410
Psp6I CCWGG 2 cut(s) 118, 213
PspGI CCWGG 2 cut(s) 118, 213
PspPI GGNCC 2 cut(s) 263, 439
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 742
RsaI GTAC 3 cut(s) 173, 287, 723
RsaNI GTAC 3 cut(s) 172, 286, 722
RseI CAYNNNNRTG 4 cut(s) 184, 271, 375, 401
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 2 cut(s) 154, 558
Sau3AI GATC 4 cut(s) 341, 514, 603, 664
Sau96I GGNCC 2 cut(s) 263, 439
SchI GAGTC 2 cut(s) 137, 410
ScrFI CCNGG 3 cut(s) 120, 134, 215
SetI ASST 9 cut(s) 73, 163, 208, 225, 239, 639, 721, 746, 761
SfaNI GCATC 4 cut(s) 338, 424, 469, 491
SmiMI CAYNNNNRTG 4 cut(s) 184, 271, 375, 401
SphI GCATGC 1 cut(s) 733
Sse9I AATT 2 cut(s) 51, 366
SsiI CCGC 3 cut(s) 90, 249, 437
SspI AATATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 59, 750
StyD4I CCNGG 3 cut(s) 118, 132, 213
StyI CCWWGG 2 cut(s) 396, 627
TaaI ACNGT 1 cut(s) 704
TaqI TCGA 4 cut(s) 419, 485, 588, 602
TasI AATT 2 cut(s) 51, 366
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 391, 538
TseFI GTSAC 2 cut(s) 251, 413
TseI GCWGC 2 cut(s) 153, 557
Tsp45I GTSAC 2 cut(s) 251, 413
TspDTI ATGAA 2 cut(s) 359, 605
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 391, 538
Tth111I GACNNNGTC 1 cut(s) 742
XagI CCTNNNNNAGG 1 cut(s) 508
XapI RAATTY 1 cut(s) 366
XceI RCATGY 2 cut(s) 189, 733
XspI CTAG 2 cut(s) 59, 750
Zsp2I ATGCAT 2 cut(s) 484, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.