RLG00000028427
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
22694039 .. 22706772
12734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028427

Sequence Viewer

Length: 726 bp
ATGAGCTTTCTCAAGCAAAGCTTGCATGGCCTGACGTTATCAATTCTGGAGAGGATACAGAATCGAACCAAGGAGAAGAAGTATTGCTTTGATCATGCATTCGATCCTGACTGTACTAATTTGGATGTCTACACAAACTGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGCGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAATCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCATGGAGGCTAATGCAACATCGATCTTCTCGGTAGAACTTGATGCTTTGGCCAATAACCATGAAACTATTTCCAGGAAATATAATGTATTGCAATCATCTACTTGTTCTTGTGCACCATTGAGTTTAGAGTACTTCAGAGACACCATGAGGAATGTGGGTTTACTATTAGAAAATAAGCCTGAGGAAGCTGCAACCATCAATCACATATTAAATCAGTTGGATGACATCTTCCAGAGGATCTAA

Protein Analysis

242

Amino Acids

26.86

Weight (kDa)

5.38

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 18 - 169 1.5e-38 Kinesin motor domain
Microtub_bd PF16796 19 - 115 4.3e-17 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 254
AciI CCGC 1 cut(s) 252
AclWI GGATC 5 cut(s) 98, 242, 368, 381, 430
AcoI YGGCCR 2 cut(s) 352, 531
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 601
AfaI GTAC 2 cut(s) 115, 614
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 323, 344, 443
AjnI CCWGG 1 cut(s) 554
AluBI AGCT 5 cut(s) 6, 21, 309, 428, 671
AluI AGCT 5 cut(s) 6, 21, 309, 428, 671
Alw21I GWGCWC 2 cut(s) 311, 598
Alw26I GTCTC 2 cut(s) 179, 615
Alw44I GTGCAC 1 cut(s) 594
AlwI GGATC 5 cut(s) 98, 242, 368, 381, 430
AoxI GGCC 4 cut(s) 28, 352, 400, 531
ApaLI GTGCAC 1 cut(s) 594
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 256
AxyI CCTNAGG 2 cut(s) 404, 663
BaeGI GKGCMC 1 cut(s) 598
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 311, 598
BbvI GCAGC 1 cut(s) 658
BccI CCATC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 556
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 179, 615
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 556
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 556
BmsI GCATC 1 cut(s) 514
BpmI CTGGAG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse21I CCTNAGG 2 cut(s) 404, 663
BseBI CCWGG 1 cut(s) 556
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 3 cut(s) 130, 347, 709
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 4 cut(s) 280, 379, 418, 654
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 4 cut(s) 30, 354, 402, 533
BshVI ATCGAT 1 cut(s) 503
BsiHKAI GWGCWC 2 cut(s) 311, 598
BsiSI CCGG 2 cut(s) 207, 351
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 179, 615
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 4 cut(s) 30, 354, 402, 533
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 311, 598
Bsp143I GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
BspACI CCGC 1 cut(s) 252
BspANI GGCC 4 cut(s) 30, 354, 402, 533
BspCNI CTCAG 4 cut(s) 279, 378, 417, 655
BspDI ATCGAT 1 cut(s) 503
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 5 cut(s) 98, 242, 368, 381, 430
BspTNI GGTCTC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 556
Bst4CI ACNGT 2 cut(s) 113, 187
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 23, 400
BstDEI CTNAG 4 cut(s) 266, 365, 404, 663
BstF5I GGATG 3 cut(s) 130, 347, 709
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 9 cut(s) 94, 106, 156, 250, 289, 376, 438, 507, 723
BstMAI GTCTC 2 cut(s) 179, 615
BstMBI GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
BstMWI GCNNNNNNNGC 2 cut(s) 22, 27
BstNI CCWGG 1 cut(s) 556
BstSCI CCNGG 1 cut(s) 554
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 3 cut(s) 373, 435, 720
BstYI RGATCY 3 cut(s) 373, 435, 720
Bsu15I ATCGAT 1 cut(s) 503
Bsu36I CCTNAGG 2 cut(s) 404, 663
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 4 cut(s) 30, 354, 402, 533
BsuTUI ATCGAT 1 cut(s) 503
BtsCI GGATG 3 cut(s) 130, 347, 709
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 2 cut(s) 23, 400
CfoI GCGC 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 503
Csp6I GTAC 2 cut(s) 114, 613
CviAII CATG 7 cut(s) 26, 95, 170, 259, 484, 542, 628
CviQI GTAC 2 cut(s) 114, 613
DdeI CTNAG 4 cut(s) 266, 365, 404, 663
DpnI GATC 9 cut(s) 93, 105, 155, 249, 288, 375, 437, 506, 722
DpnII GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
EaeI YGGCCR 2 cut(s) 352, 531
Ecl136II GAGCTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 601
Eco81I CCTNAGG 2 cut(s) 404, 663
EcoICRI GAGCTC 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 7 cut(s) 29, 98, 173, 262, 487, 545, 631
FalI AAGNNNNNCTT 3 cut(s) 37, 71, 103
FaqI GGGAC 1 cut(s) 250
FatI CATG 7 cut(s) 25, 94, 169, 258, 483, 541, 627
FauI CCCGC 1 cut(s) 259
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 3 cut(s) 137, 334, 716
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 672
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 4 cut(s) 30, 354, 402, 533
HapII CCGG 2 cut(s) 207, 351
HhaI GCGC 1 cut(s) 256
Hin1II CATG 7 cut(s) 29, 98, 173, 262, 487, 545, 631
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 3 cut(s) 61, 344, 387
HpaII CCGG 2 cut(s) 207, 351
Hpy166II GTNNAC 3 cut(s) 130, 596, 644
Hpy188I TCNGA 4 cut(s) 291, 313, 368, 620
Hpy188III TCNNGA 5 cut(s) 47, 107, 341, 377, 715
Hpy8I GTNNAC 3 cut(s) 130, 596, 644
Hpy99I CGWCG 1 cut(s) 471
HpyCH4III ACNGT 2 cut(s) 113, 187
HpyCH4IV ACGT 2 cut(s) 35, 453
HpyCH4V TGCA 9 cut(s) 25, 98, 141, 182, 274, 497, 574, 596, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 27
HpyF3I CTNAG 4 cut(s) 266, 365, 404, 663
HpySE526I ACGT 2 cut(s) 35, 453
Hsp92II CATG 7 cut(s) 29, 98, 173, 262, 487, 545, 631
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 1 cut(s) 514
MaeII ACGT 2 cut(s) 35, 453
MaeIII GTNAC 1 cut(s) 325
MalI GATC 9 cut(s) 93, 105, 155, 249, 288, 375, 437, 506, 722
MboI GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
MboII GAAGA 3 cut(s) 88, 499, 703
MflI RGATCY 3 cut(s) 373, 435, 720
MhlI GDGCHC 2 cut(s) 311, 598
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 3 cut(s) 42, 118, 317
MluNI TGGCCA 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 7 cut(s) 45, 364, 413, 481, 624, 658, 711
Mox20I TGGCCA 1 cut(s) 533
Mph1103I ATGCAT 1 cut(s) 100
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 449, 692
Msp20I TGGCCA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 207, 351
MspR9I CCNGG 1 cut(s) 556
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 1 cut(s) 556
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 22, 27
NdeII GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
NlaIII CATG 7 cut(s) 29, 98, 173, 262, 487, 545, 631
NlaIV GGNNCC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 100
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 61, 344, 387
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 1 cut(s) 673
Psp124BI GAGCTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 554
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 1 cut(s) 375
PsuI RGATCY 3 cut(s) 373, 435, 720
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 115, 614
RsaNI GTAC 2 cut(s) 114, 613
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 449, 692
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 9 cut(s) 91, 103, 153, 247, 286, 373, 435, 504, 720
ScaI AGTACT 1 cut(s) 614
ScrFI CCNGG 1 cut(s) 556
SduI GDGCHC 2 cut(s) 311, 598
SfaNI GCATC 1 cut(s) 514
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 3 cut(s) 42, 118, 317
SsiI CCGC 1 cut(s) 252
SspI AATATT 1 cut(s) 282
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 554
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 113, 187
TaiI ACGT 2 cut(s) 38, 456
TaqI TCGA 3 cut(s) 64, 102, 503
TasI AATT 3 cut(s) 42, 118, 317
TatI WGTACW 2 cut(s) 113, 612
TfiI GAWTC 3 cut(s) 61, 344, 387
Tru1I TTAA 2 cut(s) 449, 692
Tru9I TTAA 2 cut(s) 449, 692
TseI GCWGC 1 cut(s) 671
TspDTI ATGAA 3 cut(s) 158, 330, 558
TspGWI ACGGA 2 cut(s) 139, 484
VneI GTGCAC 1 cut(s) 594
XapI RAATTY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.