Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

4040334 .. 4041816

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACCGATAAAGCTGAATCGTCCGACCCCTTTGCGATTCTCGAGCGGAAGAAGGCAGCGAATCGCCTTGTCGTCGATGAGGCCATCAACGATGTCAACTTTGTCGTCGCGCTCCACCTTGAAACCATGGAGAAGCTCCAGCTCTTTAGGGGCGACACAATCCTCATCAAGATTGAAGCTCATTTTGAAGCCAACCAAAAGGATCTAGATCTGTTGAAACATGCCAACGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAAGAAGACAGCAAGAGAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCTTGGTCGCCGCGGATTGAAGAAAAAATTCAAGAAAGATAAGGACCCCCTTAAGTCTCTCAGTGCTCAGGGACCCAAGAAAGGAAGAAAGGAAAGAAAAGATGGCAGTGACAACCACAAGCAAAAAAGGCAAAATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

164

Amino Acids

18.44

Weight (kDa)

9.93

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	2 cut(s)	110, 363
AciI	CCGC	3 cut(s)	46, 361, 363
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	6 cut(s)	122, 176, 188, 217, 370, 382
AluBI	AGCT	6 cut(s)	14, 136, 142, 179, 322, 332
AluI	AGCT	6 cut(s)	14, 136, 142, 179, 322, 332
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	56, 332
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	394, 422
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	394, 422
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	68, 319
BccI	CCATC	2 cut(s)	92, 446
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	206
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	57, 333, 361
BlsI	GCNGC	3 cut(s)	58, 334, 362
Bme18I	GGWCC	2 cut(s)	394, 422
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	394, 422
BmiI	GGNNCC	3 cut(s)	396, 423, 424
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	126, 352, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	126, 352, 361
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	224, 424, 431
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	68, 319
Bsh1236I	CGCG	2 cut(s)	110, 363
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	202, 208
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	3 cut(s)	46, 361, 363
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	3 cut(s)	225, 423, 430
BspFNI	CGCG	2 cut(s)	110, 363
BspLI	GGNNCC	3 cut(s)	396, 423, 424
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	342
BssECI	CCNNGG	3 cut(s)	126, 352, 361
BssMI	GATC	2 cut(s)	202, 208
BssT1I	CCWWGG	2 cut(s)	126, 352
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	233, 410, 417
BstDSI	CCRYGG	2 cut(s)	126, 361
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	2 cut(s)	110, 363
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	205, 211
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	2 cut(s)	202, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 332, 478
BstNSI	RCATGY	1 cut(s)	224
BstUI	CGCG	2 cut(s)	110, 363
BstV1I	GCAGC	2 cut(s)	68, 319
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	202, 208
BstYI	RGATCY	2 cut(s)	202, 208
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	2 cut(s)	126, 361
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	418, 463
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	394, 422
Cfr42I	CCGCGG	1 cut(s)	364
CviAII	CATG	2 cut(s)	127, 221
CviJI	RGCY	9 cut(s)	14, 83, 136, 142, 179, 191, 244, 322, 332
CviKI_1	RGCY	9 cut(s)	14, 83, 136, 142, 179, 191, 244, 322, 332
DdeI	CTNAG	3 cut(s)	233, 410, 417
DpnI	GATC	2 cut(s)	204, 210
DpnII	GATC	2 cut(s)	202, 208
Eco130I	CCWWGG	2 cut(s)	126, 352
Eco47I	GGWCC	2 cut(s)	394, 422
Eco88I	CYCGRG	1 cut(s)	41
EcoO109I	RGGNCCY	2 cut(s)	394, 422
EcoT14I	CCWWGG	2 cut(s)	126, 352
ErhI	CCWWGG	2 cut(s)	126, 352
FaeI	CATG	2 cut(s)	130, 224
FaiI	YATR	2 cut(s)	128, 222
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	2 cut(s)	126, 220
Fnu4HI	GCNGC	3 cut(s)	57, 333, 361
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	57, 333, 361
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	57, 333, 361
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	130, 224
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	17, 37, 61
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	25, 234
Hpy188III	TCNNGA	4 cut(s)	41, 169, 206, 382
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	77, 110
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	290, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 332, 478
HpyF3I	CTNAG	3 cut(s)	233, 410, 417
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	130, 224
HspAI	GCGC	1 cut(s)	110
KflI	GGGWCCC	1 cut(s)	422
KspI	CCGCGG	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	202, 208
LmnI	GCTCC	3 cut(s)	117, 141, 256
LpnPI	CCDG	5 cut(s)	152, 261, 272, 285, 404
Lsp1109I	GCAGC	2 cut(s)	68, 319
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	341, 458
MalI	GATC	2 cut(s)	204, 210
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	2 cut(s)	202, 208
MboII	GAAGA	4 cut(s)	61, 314, 382, 447
MflI	RGATCY	2 cut(s)	202, 208
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	1 cut(s)	377
MmeI	TCCRAC	2 cut(s)	48, 264
MnlI	CCTC	3 cut(s)	73, 173, 264
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	3 cut(s)	318, 402, 490
MspA1I	CMGCKG	1 cut(s)	363
MspCI	CTTAAG	1 cut(s)	401
MvnI	CGCG	2 cut(s)	110, 363
MwoI	GCNNNNNNNGC	3 cut(s)	268, 332, 478
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	202, 208
NlaIII	CATG	2 cut(s)	130, 224
NlaIV	GGNNCC	3 cut(s)	396, 423, 424
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	17, 37, 61
PkrI	GCNGC	3 cut(s)	58, 334, 362
PpuMI	RGGWCCY	2 cut(s)	394, 422
Psp1406I	AACGTT	1 cut(s)	228
Psp5II	RGGWCCY	2 cut(s)	394, 422
PspN4I	GGNNCC	3 cut(s)	396, 423, 424
PspPI	GGNCC	2 cut(s)	394, 422
PspPPI	RGGWCCY	2 cut(s)	394, 422
PsuI	RGATCY	2 cut(s)	202, 208
SacII	CCGCGG	1 cut(s)	364
SaqAI	TTAA	3 cut(s)	318, 402, 490
SatI	GCNGC	3 cut(s)	57, 333, 361
Sau3AI	GATC	2 cut(s)	202, 208
Sau96I	GGNCC	2 cut(s)	394, 422
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	41
Sfr303I	CCGCGG	1 cut(s)	364
SgrBI	CCGCGG	1 cut(s)	364
SinI	GGWCC	2 cut(s)	394, 422
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	41, 401
SmoI	CTYRAG	2 cut(s)	41, 401
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	3 cut(s)	46, 361, 363
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	2 cut(s)	126, 352
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	42, 75
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	377
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	17, 37, 61
Tru1I	TTAA	3 cut(s)	318, 402, 490
Tru9I	TTAA	3 cut(s)	318, 402, 490
TscAI	CASTG	2 cut(s)	418, 463
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	56, 332
Tsp45I	GTSAC	1 cut(s)	458
TspRI	CASTG	2 cut(s)	418, 463
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	394, 422
XapI	RAATTY	1 cut(s)	377
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.