Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

55001232 .. 55001996

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCCAATGTGCAAGTATTCATCCGATTTTGTGATTTCACCACGCTTTTTTGTCATTTGCATTGTCGATCACTTGATAAATATTCTCCATTATGTCTTACATCTTTGTCTTTCTCGGTTTCAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCTCGGGCTCATGGTTCTCGCTTGCATACAATATTAGATCCGATAAAAAAGGACAAGAGCTCGATGAATTTGAAGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCAACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

109

Amino Acids

12.51

Weight (kDa)

7.71

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	65 - 109	9.7e-07	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	192, 247
AcsI	RAATTY	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	233, 260
AluBI	AGCT	2 cut(s)	220, 245
AluI	AGCT	2 cut(s)	220, 245
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	192, 247
Ama87I	CYCGRG	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	163
BanII	GRGCYC	2 cut(s)	170, 222
Bbv12I	GWGCWC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	170, 222
Bsp143I	GATC	4 cut(s)	68, 159, 197, 252
BspPI	GGATC	2 cut(s)	192, 247
BssMI	GATC	4 cut(s)	68, 159, 197, 252
BstC8I	GCNNGC	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	4 cut(s)	71, 162, 200, 255
BstMBI	GATC	4 cut(s)	68, 159, 197, 252
BstX2I	RGATCY	2 cut(s)	197, 252
BstYI	RGATCY	2 cut(s)	197, 252
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	183
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	5 cut(s)	168, 220, 245, 282, 308
CviKI_1	RGCY	5 cut(s)	168, 220, 245, 282, 308
DpnI	GATC	4 cut(s)	70, 161, 199, 254
DpnII	GATC	4 cut(s)	68, 159, 197, 252
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	170, 222
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	170, 222
FaeI	CATG	1 cut(s)	174
FaiI	YATR	5 cut(s)	94, 135, 137, 172, 187
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	1 cut(s)	170
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	2 cut(s)	170, 222
Hin1II	CATG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	26, 202
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	13, 61, 185, 314
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	68, 159, 197, 252
MaeII	ACGT	1 cut(s)	270
MalI	GATC	4 cut(s)	70, 161, 199, 254
MboI	GATC	4 cut(s)	68, 159, 197, 252
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	2 cut(s)	197, 252
MhlI	GDGCHC	2 cut(s)	170, 222
MluCI	AATT	1 cut(s)	227
MnlI	CCTC	1 cut(s)	298
MseI	TTAA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	245
NdeII	GATC	4 cut(s)	68, 159, 197, 252
NlaIII	CATG	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	197, 252
PvuII	CAGCTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	266
Sau3AI	GATC	4 cut(s)	68, 159, 197, 252
SduI	GDGCHC	2 cut(s)	170, 222
SetI	ASST	3 cut(s)	222, 247, 273
Sse9I	AATT	1 cut(s)	227
SspI	AATATT	2 cut(s)	83, 193
SstI	GAGCTC	1 cut(s)	222
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	67, 222
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	10, 240
TspGWI	ACGGA	2 cut(s)	301, 317
TspRI	CASTG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.