Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

10423117 .. 10427861

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG062400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCGTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGGGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCAAGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

132

Amino Acids

14.95

Weight (kDa)

9.69

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	97 - 130	3.2e-06	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	34, 350
AjnI	CCWGG	2 cut(s)	16, 273
AluBI	AGCT	3 cut(s)	256, 268, 289
AluI	AGCT	3 cut(s)	256, 268, 289
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	152, 359
ApeKI	GCWGC	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	46, 74
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	46, 74
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	18, 275
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	152, 359
BisI	GCNGC	2 cut(s)	218, 266
BlsI	GCNGC	2 cut(s)	219, 267
Bme1390I	CCNGG	2 cut(s)	18, 275
Bme18I	GGWCC	2 cut(s)	46, 74
BmgT120I	GGNCC	2 cut(s)	46, 74
BmiI	GGNNCC	3 cut(s)	48, 75, 76
BmrFI	CCNGG	2 cut(s)	18, 275
BpiI	GAAGAC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	16, 25
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	18, 275
BseDI	CCNNGG	2 cut(s)	16, 25
BseGI	GGATG	2 cut(s)	179, 310
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	76, 83
BseXI	GCAGC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	152, 359
BsmFI	GGGAC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	168, 333
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	75, 82
BspLI	GGNNCC	3 cut(s)	48, 75, 76
BspQI	GCTCTTC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	16, 25
BssMI	GATC	2 cut(s)	168, 333
Bst2UI	CCWGG	2 cut(s)	18, 275
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	62, 69
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	179, 310
BstKTI	GATC	2 cut(s)	171, 336
BstMAI	GTCTC	2 cut(s)	152, 359
BstMBI	GATC	2 cut(s)	168, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	18, 275
BstSCI	CCNGG	2 cut(s)	16, 273
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	179, 310
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	70, 115
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	46, 74
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	3 cut(s)	256, 268, 289
CviKI_1	RGCY	3 cut(s)	256, 268, 289
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	62, 69
DpnI	GATC	2 cut(s)	170, 335
DpnII	GATC	2 cut(s)	168, 333
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	46, 74
EcoO109I	RGGNCCY	2 cut(s)	46, 74
EcoRII	CCWGG	2 cut(s)	16, 273
EcoT22I	ATGCAT	1 cut(s)	323
FaeI	CATG	1 cut(s)	189
FaiI	YATR	7 cut(s)	120, 173, 187, 283, 285, 323, 378
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	218, 266
FokI	GGATG	2 cut(s)	166, 317
Fsp4HI	GCNGC	2 cut(s)	218, 266
GluI	GCNGC	2 cut(s)	218, 266
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	191, 310
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	191, 310
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	241, 321, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	62, 69
Hsp92II	CATG	1 cut(s)	189
KflI	GGGWCCC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 333
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	3, 30, 56, 260, 287, 324
Lsp1109I	GCAGC	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	5, 57, 110
MalI	GATC	2 cut(s)	170, 335
MboI	GATC	2 cut(s)	168, 333
MboII	GAAGA	3 cut(s)	99, 241, 263
MhlI	GDGCHC	1 cut(s)	70
MnlI	CCTC	2 cut(s)	193, 229
Mph1103I	ATGCAT	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	18, 275
MvaI	CCWGG	2 cut(s)	18, 275
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	168, 333
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	48, 75, 76
NmuCI	GTSAC	2 cut(s)	57, 110
NsiI	ATGCAT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	219, 267
PpuMI	RGGWCCY	2 cut(s)	46, 74
Psp5II	RGGWCCY	2 cut(s)	46, 74
Psp6I	CCWGG	2 cut(s)	16, 273
PspGI	CCWGG	2 cut(s)	16, 273
PspN4I	GGNNCC	3 cut(s)	48, 75, 76
PspPI	GGNCC	2 cut(s)	46, 74
PspPPI	RGGWCCY	2 cut(s)	46, 74
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	218, 266
Sau3AI	GATC	2 cut(s)	168, 333
Sau96I	GGNCC	2 cut(s)	46, 74
ScrFI	CCNGG	2 cut(s)	18, 275
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	142, 240, 258, 270, 291, 355, 395
SinI	GGWCC	2 cut(s)	46, 74
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
SsiI	CCGC	1 cut(s)	217
StyD4I	CCNGG	2 cut(s)	16, 273
TaaI	ACNGT	1 cut(s)	367
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	70, 115
TseFI	GTSAC	2 cut(s)	57, 110
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	57, 110
TspGWI	ACGGA	2 cut(s)	208, 319
TspRI	CASTG	2 cut(s)	70, 115
VpaK11BI	GGWCC	2 cut(s)	46, 74
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.