Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

86060693 .. 86062963

Gene Structure 2271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG509600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGGTTTCTTGCATGGCCTGACGTTATCAATTCTGGAGAGGATACAGAATCGAACCAAGGAGAAGAAGTATTGCTTTGATCATGCATTCGATCCTGACTGTACTAATTTGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGGGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTAGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAATGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

200

Amino Acids

22.3

Weight (kDa)

6.21

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	36 - 200	2.9e-56	Kinesin motor domain
Microtub_bd	PF16796	36 - 143	3e-22	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	5 cut(s)	152, 296, 458, 471, 520
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	377, 398, 431, 533
AluBI	AGCT	2 cut(s)	363, 518
AluI	AGCT	2 cut(s)	363, 518
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	5 cut(s)	152, 296, 458, 471, 520
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	82, 442
ApoI	RAATTY	1 cut(s)	371
AsuC2I	CCSGG	2 cut(s)	306, 307
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	463
BanII	GRGCYC	2 cut(s)	312, 365
Bbv12I	GWGCWC	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	2 cut(s)	3, 145
BcnI	CCSGG	2 cut(s)	306, 307
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	306, 307
BmeT110I	CYCGRG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	306, 307
BmtI	GCTAGC	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	306, 307
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	123, 305
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse21I	CCTNAGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	123, 305
BseGI	GGATG	3 cut(s)	14, 184, 437
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	3 cut(s)	334, 469, 508
BshFI	GGCC	2 cut(s)	84, 444
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	261, 306, 441
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	84, 444
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	312, 365
Bsp143I	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	84, 444
BspCNI	CTCAG	3 cut(s)	333, 468, 507
BspLI	GGNNCC	1 cut(s)	465
BspMI	ACCTGC	1 cut(s)	392
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	5 cut(s)	152, 296, 458, 471, 520
BspTNI	GGTCTC	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	123, 305
BssMI	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	167, 241
BstC8I	GCNNGC	2 cut(s)	57, 490
BstDEI	CTNAG	3 cut(s)	320, 455, 494
BstF5I	GGATG	3 cut(s)	14, 184, 437
BstKTI	GATC	8 cut(s)	6, 148, 160, 210, 304, 343, 466, 528
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
BstSCI	CCNGG	2 cut(s)	304, 305
BstX2I	RGATCY	2 cut(s)	463, 525
BstYI	RGATCY	2 cut(s)	463, 525
Bsu36I	CCTNAGG	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	84, 444
BtsCI	GGATG	3 cut(s)	14, 184, 437
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	57, 490
Cfr9I	CCCGGG	1 cut(s)	305
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	5 cut(s)	21, 80, 149, 224, 313
CviJI	RGCY	8 cut(s)	84, 310, 363, 444, 492, 518, 555, 581
CviKI_1	RGCY	8 cut(s)	84, 310, 363, 444, 492, 518, 555, 581
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	3 cut(s)	320, 455, 494
DpnI	GATC	8 cut(s)	5, 147, 159, 209, 303, 342, 465, 527
DpnII	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
EaeI	YGGCCR	1 cut(s)	442
Ecl136II	GAGCTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	312, 365
Eco31I	GGTCTC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	363
Eco81I	CCTNAGG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	154, 197
EcoT38I	GRGCYC	2 cut(s)	312, 365
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	5 cut(s)	24, 83, 152, 227, 316
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	5 cut(s)	20, 79, 148, 223, 312
FbaI	TGATCA	2 cut(s)	3, 145
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	2 cut(s)	191, 424
FriOI	GRGCYC	2 cut(s)	312, 365
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	84, 444
HapII	CCGG	3 cut(s)	261, 306, 441
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	5 cut(s)	24, 83, 152, 227, 316
HinfI	GANTC	2 cut(s)	115, 477
HpaII	CCGG	3 cut(s)	261, 306, 441
Hpy166II	GTNNAC	2 cut(s)	26, 184
Hpy188I	TCNGA	3 cut(s)	345, 367, 458
Hpy188III	TCNNGA	4 cut(s)	101, 161, 395, 467
Hpy8I	GTNNAC	2 cut(s)	26, 184
Hpy99I	CGWCG	1 cut(s)	561
HpyCH4III	ACNGT	2 cut(s)	167, 241
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	6 cut(s)	79, 152, 195, 236, 328, 587
HpyF3I	CTNAG	3 cut(s)	320, 455, 494
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	5 cut(s)	24, 83, 152, 227, 316
Ksp22I	TGATCA	2 cut(s)	3, 145
Kzo9I	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
LmnI	GCTCC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	8 cut(s)	5, 147, 159, 209, 303, 342, 465, 527
MboI	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
MboII	GAAGA	3 cut(s)	76, 142, 585
MflI	RGATCY	2 cut(s)	463, 525
MhlI	GDGCHC	2 cut(s)	312, 365
MluCI	AATT	3 cut(s)	96, 172, 371
MnlI	CCTC	5 cut(s)	28, 99, 454, 503, 571
Mph1103I	ATGCAT	2 cut(s)	154, 197
MseI	TTAA	1 cut(s)	539
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	261, 306, 441
MspR9I	CCNGG	2 cut(s)	306, 307
Mva1269I	GAATGC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	306, 307
NdeII	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	24, 83, 152, 227, 316
NlaIV	GGNNCC	1 cut(s)	465
NsiI	ATGCAT	2 cut(s)	154, 197
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	115, 477
PkrI	GCNGC	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	463, 525
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	8 cut(s)	3, 145, 157, 207, 301, 340, 463, 525
ScrFI	CCNGG	2 cut(s)	306, 307
SduI	GDGCHC	2 cut(s)	312, 365
SetI	ASST	6 cut(s)	92, 365, 386, 500, 510, 520
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	96, 172, 371
SsiI	CCGC	1 cut(s)	52
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	304, 305
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	167, 241
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	118, 156
TasI	AATT	3 cut(s)	96, 172, 371
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	115, 477
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	212, 384
TspGWI	ACGGA	4 cut(s)	43, 193, 574, 590
TspMI	CCCGGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	371
XmaI	CCCGGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	2 cut(s)	154, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.