Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

46181043 .. 46188957

Gene Structure 7915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTATCATTCATTGATTAACTACAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGGATGTCAACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACGGGAAGGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAATTGAAAGCATGGAGGCTAATGCAACATCTTCTCGCCGCGATCAACAACTGGTGGTCCTGATCCATGACCGTCGTCACATGCGGCAAAGGTGGAGTCAAGGAAAGCGTCACAGACGATCTAGAATGGAGCGGCGGTGCCACAAAGCGTTCGTGGCTAGGGTCGCTTCTCGATCTTTGTTGGGAGAGGCAATGGAGGACAGCAACGATAGGCTGGACAACGGCGATCGATTTGAGTGGGGATCAAATTGGGCTGGCAACACCGTGCGACGGCTGGGTGAAGATGGGTCTTATGGATGGGAGCCAGATTTGGGATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

229

Amino Acids

26.63

Weight (kDa)

9.12

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	62 - 153	1.5e-14	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	507
AccBSI	CCGCTC	1 cut(s)	502
AccII	CGCG	1 cut(s)	411
AciI	CCGC	5 cut(s)	112, 409, 454, 502, 505
AclWI	GGATC	6 cut(s)	266, 279, 328, 427, 619, 678
AcoI	YGGCCR	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	281, 639, 680
AgsI	TTSAA	3 cut(s)	239, 341, 377
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	47, 186
AlwI	GGATC	6 cut(s)	266, 279, 328, 427, 619, 678
AoxI	GGCC	2 cut(s)	250, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	47, 659
AvaII	GGWCC	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	302
BamHI	GGATCC	2 cut(s)	271, 683
BanI	GGYRCC	1 cut(s)	507
BccI	CCATC	2 cut(s)	647, 660
BceAI	ACGGC	2 cut(s)	607, 656
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	47, 186
BfaI	CTAG	3 cut(s)	492, 528, 688
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	113, 409, 455, 503
BlsI	GCNGC	4 cut(s)	114, 410, 456, 504
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	4 cut(s)	273, 509, 672, 685
BoxI	GACNNNNGTC	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	598
BsaI	GGTCTC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 639, 680
Bse1I	ACTGG	1 cut(s)	426
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	598
BseGI	GGATG	4 cut(s)	74, 137, 245, 671
BseLI	CCNNNNNNNGG	3 cut(s)	281, 639, 680
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	277, 316
BseNI	ACTGG	1 cut(s)	426
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	252, 300
BshNI	GGYRCC	1 cut(s)	507
BshVI	ATCGAT	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	3 cut(s)	281, 639, 680
BsmAI	GTCTC	2 cut(s)	47, 186
BsnI	GGCC	2 cut(s)	252, 300
Bso31I	GGTCTC	1 cut(s)	186
BspACI	CCGC	5 cut(s)	112, 409, 454, 502, 505
BspANI	GGCC	2 cut(s)	252, 300
BspCNI	CTCAG	2 cut(s)	276, 315
BspDI	ATCGAT	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	4 cut(s)	273, 509, 672, 685
BspPI	GGATC	6 cut(s)	266, 279, 328, 427, 619, 678
BspT107I	GGYRCC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	194, 443, 634
BstC8I	GCNNGC	3 cut(s)	117, 298, 625
BstDEI	CTNAG	2 cut(s)	263, 302
BstF5I	GGATG	4 cut(s)	74, 137, 245, 671
BstFNI	CGCG	1 cut(s)	411
BstMAI	GTCTC	2 cut(s)	47, 186
BstMCI	CGRYCG	1 cut(s)	598
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 533
BstNSI	RCATGY	1 cut(s)	454
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	411
BstX2I	RGATCY	3 cut(s)	271, 333, 683
BstYI	RGATCY	3 cut(s)	271, 333, 683
Bsu15I	ATCGAT	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	252, 300
BsuTUI	ATCGAT	1 cut(s)	598
BtsCI	GGATG	4 cut(s)	74, 137, 245, 671
Cac8I	GCNNGC	3 cut(s)	117, 298, 625
Cfr13I	GGNCC	1 cut(s)	427
ClaI	ATCGAT	1 cut(s)	598
CseI	GACGC	2 cut(s)	88, 467
CviAII	CATG	5 cut(s)	81, 177, 382, 437, 451
DdeI	CTNAG	2 cut(s)	263, 302
EaeI	YGGCCR	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	150
FaeI	CATG	5 cut(s)	84, 180, 385, 440, 454
FatI	CATG	5 cut(s)	80, 176, 381, 436, 450
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	113, 409, 455, 503
FokI	GGATG	4 cut(s)	61, 144, 232, 678
Fsp4HI	GCNGC	4 cut(s)	113, 409, 455, 503
FspBI	CTAG	3 cut(s)	492, 528, 688
GluI	GCNGC	4 cut(s)	113, 409, 455, 503
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	252, 300
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	2 cut(s)	88, 467
Hin1II	CATG	5 cut(s)	84, 180, 385, 440, 454
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	2 cut(s)	285, 466
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	47, 659
Hpy166II	GTNNAC	2 cut(s)	86, 137
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	4 cut(s)	275, 430, 492, 540
Hpy8I	GTNNAC	2 cut(s)	86, 137
Hpy99I	CGWCG	3 cut(s)	369, 447, 642
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	194, 443, 634
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	148, 189, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 533
HpyF3I	CTNAG	2 cut(s)	263, 302
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	84, 180, 385, 440, 454
Ksp22I	TGATCA	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	499, 670
MaeI	CTAG	3 cut(s)	492, 528, 688
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	446, 479
MbiI	CCGCTC	1 cut(s)	502
MboII	GAAGA	3 cut(s)	136, 393, 662
MflI	RGATCY	3 cut(s)	271, 333, 683
MluCI	AATT	2 cut(s)	372, 616
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	88, 262, 311, 379, 550, 559
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	2 cut(s)	18, 347
MslI	CAYNNNNRTG	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	524, 533
NlaIII	CATG	5 cut(s)	84, 180, 385, 440, 454
NlaIV	GGNNCC	4 cut(s)	273, 509, 672, 685
NmuCI	GTSAC	2 cut(s)	446, 479
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	114, 410, 456, 504
Ple19I	CGATCG	1 cut(s)	598
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PshAI	GACNNNNGTC	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	643
PspN4I	GGNNCC	4 cut(s)	273, 509, 672, 685
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	3 cut(s)	271, 333, 683
PvuI	CGATCG	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	18, 347
SatI	GCNGC	4 cut(s)	113, 409, 455, 503
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	475
SetI	ASST	7 cut(s)	37, 222, 308, 318, 328, 354, 464
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	372, 616
SsiI	CCGC	5 cut(s)	112, 409, 454, 502, 505
SspMI	CTAG	3 cut(s)	492, 528, 688
TaaI	ACNGT	3 cut(s)	194, 443, 634
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	541, 598
TasI	AATT	2 cut(s)	372, 616
TauI	GCSGC	4 cut(s)	115, 411, 457, 505
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	18, 347
Tru9I	TTAA	2 cut(s)	18, 347
TseFI	GTSAC	2 cut(s)	446, 479
Tsp45I	GTSAC	2 cut(s)	446, 479
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	3 cut(s)	103, 146, 382
VpaK11BI	GGWCC	1 cut(s)	427
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	3 cut(s)	492, 528, 688
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.