pycom17g27400

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
25601566 .. 25602182
617 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGAAGAAACTCATTCTGTTATCACCTAAATCATGGTATTCAATCTGGTCGTCGGTGTCGCTGAGAAAAAATATTGAGTCAAGCAGTTTCTCATTGGCAAGTTTACCGCATTCCTTAACAAGTTTACGTCTGGATTGCTGCAATCTATCAGAGATTCCGAGTGCCCTTACTATGCTGCCTTCGTTAGAGTACTTGCGTCTGAATAACAATCCAATTACAAGCCTACCAGAGAGCATGAACAATCTTGTTAAGCTTCGCATTCTTGAAGTAGCTGGTTGCAGAAACCTCACAATGCTTCCAGAGCTCCCACATGGTTTGAAACAATTGAATGGTAGAGGTTGCACATCATTGAAAAGAATAACAAATTTACCGAACTTACACATATCACCGGCCACACATTCCTTATCTGACGGCATAGTGGAACCATATATAAGGTTGTACAACATATTATTGGACTCAAATTTATGGTATTGTGGGAAACTAGTTGATGTTGCAAGCTTGTTCAATACACTACCATTGAGCAGTCCTAAGGAACAACTATTGTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

20.43

Weight (kDa)

9.1

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 38 - 76 1.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 38 - 93 6.3e-09 Leucine rich repeat
LRR_14 PF23598 39 - 130 6e-08 Leucine-rich repeat region
LRR_4 PF12799 60 - 104 3.2e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 2 cut(s) 364, 460
AfaI GTAC 2 cut(s) 191, 440
AgsI TTSAA 6 cut(s) 42, 266, 319, 328, 352, 505
AhlI ACTAGT 1 cut(s) 481
AluBI AGCT 4 cut(s) 253, 272, 304, 498
AluI AGCT 4 cut(s) 253, 272, 304, 498
Alw21I GWGCWC 1 cut(s) 306
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 138, 175
ApoI RAATTY 2 cut(s) 364, 460
AsuHPI GGTGA 2 cut(s) 15, 378
AxyI CCTNAGG 1 cut(s) 528
BaeGI GKGCMC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 125, 162
BceAI ACGGC 1 cut(s) 427
BcuI ACTAGT 1 cut(s) 481
BfaI CTAG 1 cut(s) 482
BisI GCNGC 2 cut(s) 139, 176
BlsI GCNGC 2 cut(s) 140, 177
BmcAI AGTACT 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 423
Bse118I RCCGGY 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 2 cut(s) 125, 162
BshFI GGCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 389
BsmI GAATGC 2 cut(s) 109, 258
BsnI GGCC 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 166, 306
Bsp1407I TGTACA 1 cut(s) 438
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 388
BsrGI TGTACA 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 388
BstAUI TGTACA 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 2 cut(s) 62, 528
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 125, 162
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 388
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 190, 439
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 3 cut(s) 33, 235, 311
CviJI RGCY 6 cut(s) 222, 253, 272, 304, 392, 498
CviKI_1 RGCY 6 cut(s) 222, 253, 272, 304, 392, 498
CviQI GTAC 2 cut(s) 190, 439
DdeI CTNAG 2 cut(s) 62, 528
EaeI YGGCCR 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 3 cut(s) 36, 238, 314
FatI CATG 3 cut(s) 32, 234, 310
Fnu4HI GCNGC 2 cut(s) 139, 176
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 139, 176
FspBI CTAG 1 cut(s) 482
GluI GCNGC 2 cut(s) 139, 176
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 389
HgaI GACGC 1 cut(s) 185
Hin1II CATG 3 cut(s) 36, 238, 314
HindIII AAGCTT 2 cut(s) 251, 496
HinfI GANTC 3 cut(s) 77, 154, 455
HpaII CCGG 1 cut(s) 389
HphI GGTGA 2 cut(s) 15, 378
Hpy166II GTNNAC 2 cut(s) 104, 125
Hpy188I TCNGA 4 cut(s) 151, 159, 201, 409
Hpy188III TCNNGA 3 cut(s) 131, 263, 299
Hpy8I GTNNAC 2 cut(s) 104, 125
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 141, 279, 342, 494, 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 2 cut(s) 62, 528
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 36, 238, 314
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 6 cut(s) 31, 116, 240, 258, 312, 402
Lsp1109I GCAGC 2 cut(s) 125, 162
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 127
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 166, 306
MluCI AATT 4 cut(s) 213, 323, 364, 460
MlyI GAGTC 2 cut(s) 86, 449
MnlI CCTC 2 cut(s) 296, 329
MseI TTAA 2 cut(s) 116, 249
MspI CCGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 2 cut(s) 109, 258
MwoI GCNNNNNNNGC 1 cut(s) 301
NlaIII CATG 3 cut(s) 36, 238, 314
NlaIV GGNNCC 1 cut(s) 423
PctI GAATGC 2 cut(s) 109, 258
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 140, 177
PleI GAGTC 2 cut(s) 85, 449
PpsI GAGTC 2 cut(s) 85, 449
Psp124BI GAGCTC 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 423
RsaI GTAC 2 cut(s) 191, 440
RsaNI GTAC 2 cut(s) 190, 439
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 2 cut(s) 116, 249
SatI GCNGC 2 cut(s) 139, 176
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 2 cut(s) 86, 449
SduI GDGCHC 2 cut(s) 166, 306
SetI ASST 9 cut(s) 28, 130, 255, 274, 288, 306, 340, 437, 500
SpeI ACTAGT 1 cut(s) 481
Sse9I AATT 4 cut(s) 213, 323, 364, 460
SsiI CCGC 1 cut(s) 107
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 482
SstI GAGCTC 1 cut(s) 306
TaiI ACGT 1 cut(s) 130
TasI AATT 4 cut(s) 213, 323, 364, 460
TatI WGTACW 2 cut(s) 189, 438
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 116, 249
Tru9I TTAA 2 cut(s) 116, 249
TseI GCWGC 2 cut(s) 138, 175
TspDTI ATGAA 2 cut(s) 17, 251
XapI RAATTY 2 cut(s) 364, 460
XspI CTAG 1 cut(s) 482
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.