pycom17g27410

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
25602290 .. 25602484
195 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGAAACTGCAGGGAACTTTTGAATGCGGCATATTTAGCATATTTGTCCATGAGAGCAAGATTCCAGATCGGTTCAATTACAGGAGCATGGGTAACACTGTTTTCTCTATTATTGTTCCTTCACAGCCTAATATCAACGATCGTAGGTTTAAATGCATGTATATTGTATGCCCGGCAATCGGATTGAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.36

Weight (kDa)

9.3

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 23, 76, 187
AsuC2I CCSGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 179
BsmI GAATGC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 67, 139
BspACI CCGC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 12
BssMI GATC 2 cut(s) 67, 139
Bst4CI ACNGT 1 cut(s) 100
BstKTI GATC 2 cut(s) 70, 142
BstMBI GATC 2 cut(s) 67, 139
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 96
CviAII CATG 3 cut(s) 50, 88, 157
CviJI RGCY 2 cut(s) 127, 190
CviKI_1 RGCY 2 cut(s) 127, 190
DpnI GATC 2 cut(s) 69, 141
DpnII GATC 2 cut(s) 67, 139
DraI TTTAAA 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 158
FaeI CATG 3 cut(s) 53, 91, 160
FaiI YATR 7 cut(s) 32, 41, 51, 89, 158, 162, 169
FatI CATG 3 cut(s) 49, 87, 156
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
HapII CCGG 1 cut(s) 173
Hin1II CATG 3 cut(s) 53, 91, 160
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 10, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 53, 91, 160
Kzo9I GATC 2 cut(s) 67, 139
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 67, 78, 186
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 69, 141
MboI GATC 2 cut(s) 67, 139
MluCI AATT 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 158
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 173
NdeII GATC 2 cut(s) 67, 139
NlaIII CATG 3 cut(s) 53, 91, 160
NsiI ATGCAT 1 cut(s) 158
NspI RCATGY 1 cut(s) 160
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 29
Ple19I CGATCG 1 cut(s) 142
PstI CTGCAG 1 cut(s) 12
PvuI CGATCG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 67, 139
ScrFI CCNGG 1 cut(s) 173
SetI ASST 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 8
SgeI CNNG 9 cut(s) 23, 62, 70, 77, 94, 100, 169, 184, 185
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 100
TasI AATT 1 cut(s) 76
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 103
XceI RCATGY 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.