Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

16629664 .. 16632191

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCAAATGGAAGTGTCATTAGGCAGCATAGCAGTATCCGTTGTTTTGTTGATTATAGCTTCATCATGGGCATGGAGGGTGCTGAATTGGGTGTGGTTGAAGCCAAAGAAGCTAGAAAACTGTCTGAGGCAGCAAGGTTTTGCCGGAAACTCGTACCGCCTTTTGATTGGCGATCTTAAGGAGAACATCAAGGTGGTGAAGGATGCCACTTCAAAACCCATGAACCTCTCCGATGATGTAGCCCCGCGTGTCCTGCCATATCTCCATCAAACCATTAACAAACATGGTAAGAATTCTTTCATGTGGTTTGCTACTACACCAAGGGTGACCATCATGAATCCAGACTATTTGAAAGATATATTCACAAAATACGATGATTTTCAGAAGCCACATACTAGTCCTATTGTCAAGTTGCTGTCATACGGTCTTGCACACCTCGAGGGAGAAAAATGGGTTCAACGGAGAAAGCTTATTAACCCAGCATTCCATATCGAGAAGCTAAAGAATATGTTGCCAGCATTTTATCAAAGCTGCACTGATATGATTAGCAATTGGGAGACCAAGGTGTCGAAGGAGGGATCATGTGAATTGGATATTTGGCCTTTTCTTCAAAATATGTCAGGAGATGTGATTTCTAGGACAGCATTTGGTAGTAGTTATGAAGAAGGGAGAACAATATTTGAACTCCAGAAAGAACAAGTACAACTCTTAAGTAAAGCCTTATTCATTGCTGTCATTCCAGGATTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

250

Amino Acids

28.7

Weight (kDa)

9.23

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	88 - 231	1.7e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AbsI	CCTCGAGG	1 cut(s)	437
AccII	CGCG	1 cut(s)	247
AciI	CCGC	2 cut(s)	157, 245
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	292
AfaI	GTAC	2 cut(s)	155, 702
AflII	CTTAAG	2 cut(s)	176, 709
AgsI	TTSAA	6 cut(s)	100, 213, 352, 458, 611, 683
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	5 cut(s)	59, 112, 469, 499, 531
AluI	AGCT	5 cut(s)	59, 112, 469, 499, 531
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	24, 130, 531
ApoI	RAATTY	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	208, 337
AvaI	CYCGRG	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	36, 142, 518
BccI	CCATC	2 cut(s)	273, 338
BciT130I	CCWGG	1 cut(s)	741
BciVI	GTATCC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	551
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	113, 396, 636
BfrI	CTTAAG	2 cut(s)	176, 709
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	3 cut(s)	25, 131, 532
BlsI	GCNGC	3 cut(s)	26, 132, 533
Bme1390I	CCNGG	1 cut(s)	741
BmeT110I	CYCGRG	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	741
BmsI	GCATC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	671
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	320, 561
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	320, 561
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	36, 142, 518
BseYI	CCCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	601
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	172, 578
BspACI	CCGC	2 cut(s)	157, 245
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	333
BspPI	GGATC	1 cut(s)	586
BspTI	CTTAAG	2 cut(s)	176, 709
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	726
BssECI	CCNNGG	2 cut(s)	320, 561
BssMI	GATC	2 cut(s)	172, 578
BssT1I	CCWWGG	2 cut(s)	320, 561
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	122, 425
BstAFI	CTTAAG	2 cut(s)	176, 709
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	175, 581
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	2 cut(s)	172, 578
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 253
BstNI	CCWGG	1 cut(s)	741
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	739
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	36, 142, 518
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	516
CciI	TCATGA	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	154, 701
CviAII	CATG	7 cut(s)	66, 72, 220, 284, 301, 334, 582
CviQI	GTAC	2 cut(s)	154, 701
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	174, 580
DpnII	GATC	2 cut(s)	172, 578
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	320, 561
Eco31I	GGTCTC	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	320, 561
ErhI	CCWWGG	2 cut(s)	320, 561
FaeI	CATG	7 cut(s)	69, 75, 223, 287, 304, 337, 585
FatI	CATG	7 cut(s)	65, 71, 219, 283, 300, 333, 581
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	25, 131, 532
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	25, 131, 532
FspBI	CTAG	3 cut(s)	113, 396, 636
GluI	GCNGC	3 cut(s)	25, 131, 532
GsaI	CCCAGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	7 cut(s)	69, 75, 223, 287, 304, 337, 585
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	208, 337
Hpy188I	TCNGA	3 cut(s)	126, 232, 384
Hpy188III	TCNNGA	5 cut(s)	334, 341, 493, 621, 688
HpyAV	CCTTC	3 cut(s)	193, 565, 659
HpyCH4III	ACNGT	2 cut(s)	122, 425
HpyCH4V	TGCA	3 cut(s)	4, 431, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 253
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	7 cut(s)	69, 75, 223, 287, 304, 337, 585
Kzo9I	GATC	2 cut(s)	172, 578
LpnPI	CCDG	8 cut(s)	157, 266, 354, 492, 528, 606, 701, 726
Lsp1109I	GCAGC	3 cut(s)	36, 142, 518
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	113, 396, 636
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	174, 580
MboI	GATC	2 cut(s)	172, 578
MboII	GAAGA	2 cut(s)	599, 674
MfeI	CAATTG	1 cut(s)	550
MluCI	AATT	4 cut(s)	85, 292, 550, 587
MnlI	CCTC	7 cut(s)	69, 120, 236, 433, 446, 568, 741
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	4 cut(s)	177, 276, 474, 710
MslI	CAYNNNNRTG	3 cut(s)	70, 191, 539
MspCI	CTTAAG	2 cut(s)	176, 709
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	741
MunI	CAATTG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	109, 253
NdeII	GATC	2 cut(s)	172, 578
NlaIII	CATG	7 cut(s)	69, 75, 223, 287, 304, 337, 585
NmuCI	GTSAC	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	437
PagI	TCATGA	1 cut(s)	333
PctI	GAATGC	1 cut(s)	482
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	3 cut(s)	26, 132, 533
Psp6I	CCWGG	1 cut(s)	739
PspEI	GGTNACC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	739
PspXI	VCTCGAGB	1 cut(s)	437
RsaI	GTAC	2 cut(s)	155, 702
RsaNI	GTAC	2 cut(s)	154, 701
RseI	CAYNNNNRTG	3 cut(s)	70, 191, 539
SaqAI	TTAA	4 cut(s)	177, 276, 474, 710
SatI	GCNGC	3 cut(s)	25, 131, 532
Sau3AI	GATC	2 cut(s)	172, 578
ScrFI	CCNGG	1 cut(s)	741
SfaNI	GCATC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	3 cut(s)	70, 191, 539
SmlI	CTYRAG	3 cut(s)	176, 437, 709
SmoI	CTYRAG	3 cut(s)	176, 437, 709
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	4 cut(s)	85, 292, 550, 587
SsiI	CCGC	2 cut(s)	157, 245
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	3 cut(s)	113, 396, 636
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	2 cut(s)	320, 561
TaaI	ACNGT	2 cut(s)	122, 425
TaqI	TCGA	3 cut(s)	438, 492, 569
TasI	AATT	4 cut(s)	85, 292, 550, 587
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	177, 276, 474, 710
Tru9I	TTAA	4 cut(s)	177, 276, 474, 710
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	24, 130, 531
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	6 cut(s)	51, 236, 289, 350, 675, 715
TspGWI	ACGGA	2 cut(s)	28, 475
TspRI	CASTG	1 cut(s)	541
Vha464I	CTTAAG	2 cut(s)	176, 709
XapI	RAATTY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	3 cut(s)	113, 396, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.