RchiOBHm_Chr0c39g0503221

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000811
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGATGTTGCCTATGGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCAAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATTCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.33

Weight (kDa)

6.59

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AccII CGCG 1 cut(s) 311
AciI CCGC 3 cut(s) 305, 477, 531
AclI AACGTT 1 cut(s) 334
AclWI GGATC 2 cut(s) 191, 204
AcuI CTGAAG 2 cut(s) 45, 162
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 3 cut(s) 133, 134, 274
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 309
AhdI GACNNNNNGTC 1 cut(s) 313
AluBI AGCT 3 cut(s) 141, 182, 262
AluI AGCT 3 cut(s) 141, 182, 262
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 17, 485
AsuHPI GGTGA 1 cut(s) 114
AvaII GGWCC 1 cut(s) 485
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 165, 368
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 398
BfrI CTTAAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 391
BglI GCCNNNNNGGC 1 cut(s) 16
BlpI GCTNAGC 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 17, 485
BmiI GGNNCC 2 cut(s) 18, 198
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 180
BoxI GACNNNNGTC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 165, 368
Bpu1102I GCTNAGC 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 134, 274
Bse1I ACTGG 2 cut(s) 186, 216
Bse3DI GCAATG 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 133, 134, 274
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 186, 216
BseRI GAGGAG 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 133, 134, 274
BsmAI GTCTC 1 cut(s) 498
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 3 cut(s) 305, 477, 531
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 18, 198
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 2 cut(s) 191, 204
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 186, 216
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 233, 452
Bst6I CTCTTC 3 cut(s) 224, 273, 501
BstACI GRCGYC 1 cut(s) 107
BstAFI CTTAAG 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 16, 106
BstPAI GACNNNNGTC 1 cut(s) 490
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 165, 368
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 19
BtsI GCAGTG 2 cut(s) 395, 465
BtsIMutI CAGTG 3 cut(s) 354, 395, 465
BveI ACCTGC 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 17, 485
CseI GACGC 2 cut(s) 115, 317
Csp6I GTAC 1 cut(s) 229
CviAII CATG 2 cut(s) 89, 392
CviJI RGCY 6 cut(s) 19, 141, 182, 262, 267, 514
CviKI_1 RGCY 6 cut(s) 19, 141, 182, 262, 267, 514
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 224, 273, 501
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 3 cut(s) 224, 273, 501
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 2 cut(s) 45, 162
FaeI CATG 2 cut(s) 92, 395
FaiI YATR 5 cut(s) 14, 24, 90, 382, 393
FatI CATG 2 cut(s) 88, 391
HaeIII GGCC 1 cut(s) 19
HgaI GACGC 2 cut(s) 115, 317
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 92, 395
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 1 cut(s) 491
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 2 cut(s) 52, 432
Hpy188III TCNNGA 2 cut(s) 223, 552
Hpy8I GTNNAC 2 cut(s) 52, 432
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 177, 420, 476
HpyCH4III ACNGT 2 cut(s) 233, 452
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 5 cut(s) 395, 400, 458, 465, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 106
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 334
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 92, 395
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 197, 199, 227, 260, 386, 501
LweI GCATC 1 cut(s) 445
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 207, 349
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 6 cut(s) 165, 168, 211, 290, 373, 488
MflI RGATCY 1 cut(s) 196
MluCI AATT 3 cut(s) 67, 300, 340
MluI ACGCGT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 500
MnlI CCTC 4 cut(s) 127, 153, 238, 430
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 4 cut(s) 321, 327, 339, 420
MslI CAYNNNNRTG 2 cut(s) 155, 381
MspCI CTTAAG 1 cut(s) 326
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 16, 106
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 92, 395
NlaIV GGNNCC 2 cut(s) 18, 198
NmuCI GTSAC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 365
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PshAI GACNNNNGTC 1 cut(s) 490
Psp1406I AACGTT 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 18, 198
PspPI GGNCC 2 cut(s) 17, 485
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 155, 381
SaqAI TTAA 4 cut(s) 321, 327, 339, 420
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 17, 485
SchI GAGTC 1 cut(s) 500
SetI ASST 8 cut(s) 143, 169, 184, 264, 337, 405, 431, 441
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 155, 381
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 67, 300, 340
SsiI CCGC 3 cut(s) 305, 477, 531
TaaI ACNGT 2 cut(s) 233, 452
TaiI ACGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 104, 224
TaqII GACCGA 1 cut(s) 489
TasI AATT 3 cut(s) 67, 300, 340
Tru1I TTAA 4 cut(s) 321, 327, 339, 420
Tru9I TTAA 4 cut(s) 321, 327, 339, 420
TscAI CASTG 3 cut(s) 354, 402, 465
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 374, 380
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 3 cut(s) 354, 402, 465
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.