AT1G23830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000475
Physical Location & Seq
Reverse (-)
8422960 .. 8424088
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23830.1

Sequence Viewer

Length: 1038 bp
ATGGAGACGAATAGCGAAGAGAAGCTAAGTGTCATCGAACTACTAAAACGAGCTCTTAAGCTACTCTTTGGTAACATCAATCTCTTGCTCTTCCTATGCCTCTGCTCTCTCCCACTGTTTTTTTTCTTGATCTTCTTTGAGCTCTCCCTCCAAACCACCGTCTATCTCACTTCCCAATTCCTCTGGAAACTACTCATTCTGGGAGAAGACTTGCCGGAAAATGATCTGATTCTCATATCAGAGAAAAAGAATGATCTGATTTCATGGCTGATCCAGACATTTCTGCTCTACTTCTTCCCCTACACCATTCTTGACCTTCTTACCACCACCACGATCGTTGCAGCATCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTTTATTTGGTAGAGAGATCTATCAAAATATGTCAGAACAGAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCTCCTTTGGTCAACCTCAGTTTTTCTTTTCTTTTTCTTGTTCTTTTTTCTTCAGTTTCTCTCTGGTTCAACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAGGGTTCCACTACCAACCAACGGGTCTATTCAACGTGGTAGTGCCTCTGACTCTTCTGATGCAATGTACTCTATTTATAGTTCTGACTGCAAAGTATAGTAAGTGGAGCTCCGGATGGAACATGGGTTTGGTTGTTTCGGTCTTGGAAGAAGACGAAGATGGTCAAGGCATCTACGGAGGAGATGCTCTGTCTCTTTCAGGTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAATGTTCTTGGTCTTCGGTCTTGCGACAAGGATGCCATGTTTATACTCCAAATGCAGTGCGAGTGGAAATGGAGTGATGTACACTGGCTTCTATGTAGGCTTGATTTGTGTTGGCAATTTACTTAAATGGGTGACTTGTCTTGCCTGTTACCATGATTGTAAAACTATGGTTTTGAGAAAAAAGCGTGATGTAGAACAAGCTAAAACTCCTGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

39.41

Weight (kDa)

7.44

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 683
AclWI GGATC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 2 cut(s) 640, 899
AfiI CCNNNNNNNGG 1 cut(s) 592
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 531, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 6 cut(s) 25, 53, 61, 142, 681, 1019
AluI AGCT 6 cut(s) 25, 53, 61, 142, 681, 1019
Alw21I GWGCWC 3 cut(s) 55, 144, 683
Alw26I GTCTC 1 cut(s) 768
AlwI GGATC 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 341, 385, 1031
AsuHPI GGTGA 1 cut(s) 961
BanII GRGCYC 3 cut(s) 55, 144, 683
BarI GAAGNNNNNNTAC 2 cut(s) 890, 922
BbsI GAAGAC 3 cut(s) 213, 729, 823
Bbv12I GWGCWC 3 cut(s) 55, 144, 683
BbvI GCAGC 3 cut(s) 353, 372, 1018
BccI CCATC 2 cut(s) 681, 725
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 4 cut(s) 330, 364, 832, 866
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 768
BfrI CTTAAG 1 cut(s) 56
BfuI GTATCC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 382
BglII AGATCT 1 cut(s) 404
BisI GCNGC 3 cut(s) 342, 386, 1032
BlsI GCNGC 3 cut(s) 343, 387, 1033
BmiI GGNNCC 1 cut(s) 578
BmsI GCATC 5 cut(s) 353, 621, 745, 750, 840
BpiI GAAGAC 3 cut(s) 213, 729, 823
BsaAI YACGTR 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 683
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 1 cut(s) 641
BseAI TCCGGA 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 3 cut(s) 362, 692, 855
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 1 cut(s) 765
BseXI GCAGC 3 cut(s) 353, 372, 1018
Bsh1236I CGCG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 3 cut(s) 55, 144, 683
BsiSI CCGG 2 cut(s) 215, 684
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 1 cut(s) 768
Bsp1286I GDGCHC 3 cut(s) 55, 144, 683
Bsp13I TCCGGA 1 cut(s) 683
Bsp1407I TGTACA 1 cut(s) 897
Bsp143I GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
BspCNI CTCAG 1 cut(s) 491
BspEI TCCGGA 1 cut(s) 683
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 1 cut(s) 265
BspQI GCTCTTC 2 cut(s) 95, 366
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 117, 160
Bst6I CTCTTC 4 cut(s) 12, 95, 366, 630
BstAFI CTTAAG 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 897
BstBAI YACGTR 1 cut(s) 541
BstDEI CTNAG 2 cut(s) 26, 478
BstF5I GGATG 3 cut(s) 362, 692, 855
BstFNI CGCG 1 cut(s) 564
BstKTI GATC 7 cut(s) 132, 226, 256, 273, 336, 407, 447
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstSNI TACGTA 1 cut(s) 541
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 3 cut(s) 353, 372, 1018
BstV2I GAAGAC 3 cut(s) 213, 729, 823
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuI GTATCC 1 cut(s) 553
BtsCI GGATG 3 cut(s) 362, 692, 855
BtsI GCAGTG 1 cut(s) 880
BtsIMutI CAGTG 3 cut(s) 113, 880, 900
Csp6I GTAC 2 cut(s) 639, 898
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 5 cut(s) 264, 694, 791, 855, 971
CviQI GTAC 2 cut(s) 639, 898
DdeI CTNAG 2 cut(s) 26, 478
DpnI GATC 7 cut(s) 131, 225, 255, 272, 335, 406, 446
DpnII GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
Eam1104I CTCTTC 4 cut(s) 12, 95, 366, 630
EarI CTCTTC 4 cut(s) 12, 95, 366, 630
Ecl136II GAGCTC 3 cut(s) 53, 142, 681
Eco105I TACGTA 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 3 cut(s) 55, 144, 683
Eco53kI GAGCTC 3 cut(s) 53, 142, 681
Eco57I CTGAAG 1 cut(s) 497
EcoICRI GAGCTC 3 cut(s) 53, 142, 681
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 3 cut(s) 55, 144, 683
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 5 cut(s) 267, 697, 794, 858, 974
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 5 cut(s) 263, 693, 790, 854, 970
FbaI TGATCA 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 342, 386, 1032
FokI GGATG 3 cut(s) 349, 699, 862
FriOI GRGCYC 3 cut(s) 55, 144, 683
Fsp4HI GCNGC 3 cut(s) 342, 386, 1032
GluI GCNGC 3 cut(s) 342, 386, 1032
HapII CCGG 2 cut(s) 215, 684
Hin1II CATG 5 cut(s) 267, 697, 794, 858, 974
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 2 cut(s) 229, 622
HpaII CCGG 2 cut(s) 215, 684
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 3 cut(s) 358, 474, 900
Hpy188I TCNGA 8 cut(s) 228, 241, 258, 423, 444, 621, 630, 657
Hpy188III TCNNGA 5 cut(s) 127, 184, 274, 311, 684
Hpy8I GTNNAC 3 cut(s) 358, 474, 900
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 2 cut(s) 117, 160
HpyCH4IV ACGT 2 cut(s) 540, 606
HpyCH4V TGCA 4 cut(s) 341, 634, 662, 873
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 26, 478
HpySE526I ACGT 2 cut(s) 540, 606
Hsp92II CATG 5 cut(s) 267, 697, 794, 858, 974
Kpn2I TCCGGA 1 cut(s) 683
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
LguI GCTCTTC 2 cut(s) 95, 366
LmnI GCTCC 2 cut(s) 678, 686
Lsp1109I GCAGC 3 cut(s) 353, 372, 1018
LweI GCATC 5 cut(s) 353, 621, 745, 750, 840
MaeII ACGT 2 cut(s) 540, 606
MaeIII GTNAC 4 cut(s) 71, 800, 949, 965
MalI GATC 7 cut(s) 131, 225, 255, 272, 335, 406, 446
MboI GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 3 cut(s) 55, 144, 683
MluCI AATT 2 cut(s) 176, 934
MlyI GAGTC 1 cut(s) 616
MnlI CCTC 9 cut(s) 110, 158, 191, 428, 473, 487, 627, 743, 815
MroI TCCGGA 1 cut(s) 683
MseI TTAA 4 cut(s) 57, 818, 942, 1036
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 2 cut(s) 215, 684
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
NlaIII CATG 5 cut(s) 267, 697, 794, 858, 974
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 2 cut(s) 800, 949
PciSI GCTCTTC 2 cut(s) 95, 366
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 343, 387, 1033
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
Ppu21I YACGTR 1 cut(s) 541
Psp124BI GAGCTC 3 cut(s) 55, 144, 683
PspN4I GGNNCC 1 cut(s) 578
PsuI RGATCY 1 cut(s) 404
PvuI CGATCG 1 cut(s) 336
RsaI GTAC 2 cut(s) 640, 899
RsaNI GTAC 2 cut(s) 639, 898
SacI GAGCTC 3 cut(s) 55, 144, 683
SapI GCTCTTC 2 cut(s) 95, 366
SaqAI TTAA 4 cut(s) 57, 818, 942, 1036
SatI GCNGC 3 cut(s) 342, 386, 1032
Sau3AI GATC 7 cut(s) 129, 223, 253, 270, 333, 404, 444
SchI GAGTC 1 cut(s) 616
SduI GDGCHC 3 cut(s) 55, 144, 683
SfaNI GCATC 5 cut(s) 353, 621, 745, 750, 840
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SnaBI TACGTA 1 cut(s) 541
Sse9I AATT 2 cut(s) 176, 934
SstI GAGCTC 3 cut(s) 55, 144, 683
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 117, 160
TaiI ACGT 2 cut(s) 543, 609
TaqI TCGA 2 cut(s) 36, 350
TaqII GACCGA 2 cut(s) 700, 824
TasI AATT 2 cut(s) 176, 934
TatI WGTACW 2 cut(s) 638, 897
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 4 cut(s) 57, 818, 942, 1036
Tru9I TTAA 4 cut(s) 57, 818, 942, 1036
TscAI CASTG 3 cut(s) 120, 880, 907
TseFI GTSAC 2 cut(s) 800, 949
TseI GCWGC 3 cut(s) 341, 385, 1031
Tsp45I GTSAC 2 cut(s) 800, 949
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 762
TspRI CASTG 3 cut(s) 120, 880, 907
Vha464I CTTAAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.