Rh4BG422000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000475
Physical Location & Seq
Reverse (-)
56681992 .. 56682261
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG422000.1

Sequence Viewer

Length: 270 bp
ATGATGTTACCAAAATTGCCATTCGAGCCTGGTAGAATCAGGGAGGCATTAGTTAAGCTAGAAGAGCTTAATTCCCACTCCAACAAACTCATATCTGTTACCTCATGGCTTCTAAATGGCACCATTAGAGTTGGCACGGTTCAACTTTGCAAACTAATCACCTTCCTGGCCACGGTCACTGTTATTGATTCTGCTTCAACAATATATAAGGGCGGAGCTGGGAGGTCCAGTGGGTCTCAGAGATCTTTTACGAAACAATTTCAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.8

Weight (kDa)

10.22

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 2 cut(s) 143, 198
AjnI CCWGG 2 cut(s) 28, 165
AluBI AGCT 3 cut(s) 58, 67, 218
AluI AGCT 3 cut(s) 58, 67, 218
Alw26I GTCTC 1 cut(s) 240
AoxI GGCC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 30, 167
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 30, 167
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 30, 167
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 30, 167
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 228
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 30, 167
Bst4CI ACNGT 3 cut(s) 139, 175, 181
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 171
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 25, 64
BstNI CCWGG 2 cut(s) 30, 167
BstSCI CCNGG 2 cut(s) 28, 165
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 177, 235
Cfr13I GGNCC 1 cut(s) 225
CviAII CATG 1 cut(s) 105
CviJI RGCY 6 cut(s) 28, 58, 67, 109, 170, 218
CviKI_1 RGCY 6 cut(s) 28, 58, 67, 109, 170, 218
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 28, 165
FaeI CATG 1 cut(s) 108
FaiI YATR 4 cut(s) 92, 106, 205, 207
FatI CATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 59
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 1 cut(s) 108
HinfI GANTC 2 cut(s) 36, 188
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 240, 264
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 3 cut(s) 139, 175, 181
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 64
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 242
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 7 cut(s) 15, 25, 42, 152, 179, 204, 241
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 3 cut(s) 6, 97, 175
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 14, 70, 257
MluNI TGGCCA 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 37, 112, 216
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 2 cut(s) 54, 69
Msp20I TGGCCA 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 30, 167
MvaI CCWGG 2 cut(s) 30, 167
MwoI GCNNNNNNNGC 2 cut(s) 25, 64
NdeII GATC 1 cut(s) 242
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 36, 188
Psp6I CCWGG 2 cut(s) 28, 165
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 2 cut(s) 28, 165
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 54, 69
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 30, 167
SetI ASST 6 cut(s) 60, 69, 104, 164, 220, 227
SinI GGWCC 1 cut(s) 225
Sse9I AATT 3 cut(s) 14, 70, 257
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 28, 165
TaaI ACNGT 3 cut(s) 139, 175, 181
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 14, 70, 257
TfiI GAWTC 2 cut(s) 36, 188
Tru1I TTAA 2 cut(s) 54, 69
Tru9I TTAA 2 cut(s) 54, 69
TscAI CASTG 2 cut(s) 184, 235
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 2 cut(s) 184, 235
VpaK11BI GGWCC 1 cut(s) 225
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.