Rh4BG421400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000475
Physical Location & Seq
Reverse (-)
56667993 .. 56668934
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG421400.1

Sequence Viewer

Length: 942 bp
ATGAAGAATCCAATAGATCCCGAGCAGATGAAGCTCTGGTTTCTTGGCACCTTTGCCATAATCATATCAGCCATGAAAATCCCCTTCAGAAATCCCAATTTCATAACCTTTACTTTGATTACCTTAATTCCATTATTTTTCATAATGTTAATACCAAGACTACTTCATATCCAGGATCCGCTTATTAATTTGTTCATAGAGGCATTAGAAAAGCGAAAAATTCTTACTTACACCTCCACTTTAGCCACCATAAAGACCTCTCGGGCTGTAGAACCGATCACTCAGTTTCCGAAAGTGTACATGGATGACCTGGTCAACTTCCTCACTGCACTGGCAACCATCTATGCTTCCTCAACAATCCATACTAGTAATGGTGATCATGAGGCCTCAATGGGTCTCAGAGATCTTCTGAAAAGTTCCATATCCAAATCACGGTGGCGCGACGGTGTTTTCACATTCATTGCTATGTCCATGTTGTACAATATTTGTTTACCTTATGTGTCCTATTGTATTCATGTACAACAGCTGCATTTATCAGGTTTTAGAGACAGTTTAATCTTGAAGTTCGCACATGTTGTGGTTCCTGCTGTGACATTTTCTATATGGGTGGAGTACAATGCCTGGTGGAAGCTAAGTGTTGTTGTGTCCGTTTTAGAGTTAGAGGAGCAGAGAGGATTTCAAGCATTTTCAACCTCATCACAGTTAATGAAAGGAAACAAACTACGAGGATTCGTCTTGATGCTTCTTCTTCGGAGCTCGGATTGGCCAACCATCCTTAGAGGACAGAGTTTTTACGTTCCAAGTACAGATATTGCACATATTTTTCTTCACGCAGGCCTATTGTGTTTAGGGAAGGTCCTGACTTGGATGGTTTTCACAGTTTATTACTTCGATTGCAAGAGTCGTCGGCAGAAAAGGCCCTTTTATTCTCTAGTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

36.07

Weight (kDa)

9.53

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 441
AciI CCGC 1 cut(s) 179
AclWI GGATC 3 cut(s) 11, 170, 183
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 70
AfaI GTAC 5 cut(s) 299, 479, 519, 614, 805
AfiI CCNNNNNNNGG 1 cut(s) 432
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 3 cut(s) 562, 680, 690
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 3 cut(s) 171, 309, 620
AluBI AGCT 4 cut(s) 34, 526, 631, 756
AluI AGCT 4 cut(s) 34, 526, 631, 756
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 2 cut(s) 401, 540
AlwI GGATC 3 cut(s) 11, 170, 183
Ama87I CYCGRG 2 cut(s) 20, 261
AoxI GGCC 4 cut(s) 384, 764, 835, 917
ApeKI GCWGC 1 cut(s) 526
ApoI RAATTY 1 cut(s) 219
AseI ATTAAT 1 cut(s) 186
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 856, 918
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 2 cut(s) 20, 261
AvaII GGWCC 1 cut(s) 856
BalI TGGCCA 1 cut(s) 766
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 1 cut(s) 513
BccI CCATC 3 cut(s) 347, 779, 862
BciT130I CCWGG 3 cut(s) 173, 311, 622
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 401, 540
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 2 cut(s) 366, 932
BfmI CTRYAG 2 cut(s) 267, 938
BglII AGATCT 1 cut(s) 403
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
Bme1390I CCNGG 3 cut(s) 173, 311, 622
Bme18I GGWCC 1 cut(s) 856
BmeT110I CYCGRG 2 cut(s) 20, 261
BmgT120I GGNCC 2 cut(s) 856, 918
BmiI GGNNCC 3 cut(s) 49, 177, 582
BmrFI CCNGG 3 cut(s) 173, 311, 622
BmsI GCATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 401
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 173, 311, 622
BseGI GGATG 3 cut(s) 310, 771, 873
BseLI CCNNNNNNNGG 1 cut(s) 432
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 296, 412
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 4 cut(s) 386, 766, 837, 919
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 758
BsiHKCI CYCGRG 2 cut(s) 20, 261
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 401, 540
BsnI GGCC 4 cut(s) 386, 766, 837, 919
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 2 cut(s) 20, 261
Bsp1286I GDGCHC 1 cut(s) 758
Bsp1407I TGTACA 3 cut(s) 297, 477, 517
Bsp143I GATC 5 cut(s) 16, 175, 276, 376, 403
BspACI CCGC 1 cut(s) 179
BspANI GGCC 4 cut(s) 386, 766, 837, 919
BspCNI CTCAG 2 cut(s) 295, 411
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 49, 177, 582
BspPI GGATC 3 cut(s) 11, 170, 183
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 459
BsrGI TGTACA 3 cut(s) 297, 477, 517
BsrI ACTGG 1 cut(s) 336
BssMI GATC 5 cut(s) 16, 175, 276, 376, 403
Bst2UI CCWGG 3 cut(s) 173, 311, 622
Bst4CI ACNGT 5 cut(s) 435, 446, 551, 702, 880
BstAUI TGTACA 3 cut(s) 297, 477, 517
BstC8I GCNNGC 1 cut(s) 835
BstDEI CTNAG 4 cut(s) 282, 398, 632, 776
BstF5I GGATG 3 cut(s) 310, 771, 873
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 5 cut(s) 19, 178, 279, 379, 406
BstMAI GTCTC 2 cut(s) 401, 540
BstMBI GATC 5 cut(s) 16, 175, 276, 376, 403
BstMWI GCNNNNNNNGC 2 cut(s) 31, 916
BstNI CCWGG 3 cut(s) 173, 311, 622
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 171, 309, 620
BstSFI CTRYAG 2 cut(s) 267, 938
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 513
BstX2I RGATCY 3 cut(s) 16, 175, 403
BstYI RGATCY 3 cut(s) 16, 175, 403
BsuRI GGCC 4 cut(s) 386, 766, 837, 919
BtsCI GGATG 3 cut(s) 310, 771, 873
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 329
Cac8I GCNNGC 1 cut(s) 835
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 2 cut(s) 856, 918
CsiI ACCWGGT 1 cut(s) 309
Csp6I GTAC 5 cut(s) 298, 478, 518, 613, 804
CviAII CATG 6 cut(s) 73, 301, 380, 472, 515, 572
CviQI GTAC 5 cut(s) 298, 478, 518, 613, 804
DdeI CTNAG 4 cut(s) 282, 398, 632, 776
DpnI GATC 5 cut(s) 18, 177, 278, 378, 405
DpnII GATC 5 cut(s) 16, 175, 276, 376, 403
EaeI YGGCCR 1 cut(s) 764
Ecl136II GAGCTC 1 cut(s) 756
Eco147I AGGCCT 2 cut(s) 386, 837
Eco24I GRGCYC 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 856
Eco53kI GAGCTC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 70
Eco88I CYCGRG 2 cut(s) 20, 261
EcoICRI GAGCTC 1 cut(s) 756
EcoO109I RGGNCCY 2 cut(s) 856, 918
EcoRII CCWGG 3 cut(s) 171, 309, 620
EcoT38I GRGCYC 1 cut(s) 758
FaeI CATG 6 cut(s) 76, 304, 383, 475, 518, 575
FatI CATG 6 cut(s) 72, 300, 379, 471, 514, 571
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 527
FokI GGATG 3 cut(s) 317, 758, 880
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 1 cut(s) 527
FspBI CTAG 2 cut(s) 366, 932
GlaI GCGC 1 cut(s) 440
GluI GCNGC 1 cut(s) 527
HaeIII GGCC 4 cut(s) 386, 766, 837, 919
HhaI GCGC 1 cut(s) 441
Hin1II CATG 6 cut(s) 76, 304, 383, 475, 518, 575
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 7, 729, 901
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 3 cut(s) 298, 316, 491
Hpy188I TCNGA 6 cut(s) 89, 291, 401, 411, 753, 760
Hpy188III TCNNGA 5 cut(s) 20, 380, 559, 736, 859
Hpy8I GTNNAC 3 cut(s) 298, 316, 491
Hpy99I CGWCG 2 cut(s) 446, 909
HpyAV CCTTC 2 cut(s) 94, 847
HpyCH4III ACNGT 5 cut(s) 435, 446, 551, 702, 880
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 4 cut(s) 329, 529, 815, 897
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 916
HpyF3I CTNAG 4 cut(s) 282, 398, 632, 776
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 6 cut(s) 76, 304, 383, 475, 518, 575
HspAI GCGC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 5 cut(s) 16, 175, 276, 376, 403
LmnI GCTCC 2 cut(s) 664, 753
Lsp1109I GCAGC 1 cut(s) 513
LweI GCATC 1 cut(s) 729
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 2 cut(s) 366, 932
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 589
MalI GATC 5 cut(s) 18, 177, 278, 378, 405
MboI GATC 5 cut(s) 16, 175, 276, 376, 403
MboII GAAGA 5 cut(s) 16, 398, 737, 740, 818
MflI RGATCY 3 cut(s) 16, 175, 403
MhlI GDGCHC 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 766
MluCI AATT 4 cut(s) 97, 126, 187, 219
MluNI TGGCCA 1 cut(s) 766
MlyI GAGTC 1 cut(s) 910
Mox20I TGGCCA 1 cut(s) 766
MscI TGGCCA 1 cut(s) 766
MseI TTAA 5 cut(s) 125, 149, 186, 554, 704
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 766
MspA1I CMGCKG 1 cut(s) 526
MspR9I CCNGG 3 cut(s) 173, 311, 622
MvaI CCWGG 3 cut(s) 173, 311, 622
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 31, 916
NdeII GATC 5 cut(s) 16, 175, 276, 376, 403
NlaIII CATG 6 cut(s) 76, 304, 383, 475, 518, 575
NlaIV GGNNCC 3 cut(s) 49, 177, 582
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 575
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 2 cut(s) 386, 837
PciI ACATGT 1 cut(s) 571
PfeI GAWTC 2 cut(s) 7, 729
PflFI GACNNNGTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 1 cut(s) 528
PleI GAGTC 1 cut(s) 909
PpsI GAGTC 1 cut(s) 909
PpuMI RGGWCCY 1 cut(s) 856
PscI ACATGT 1 cut(s) 571
PshBI ATTAAT 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 856
Psp6I CCWGG 3 cut(s) 171, 309, 620
PspGI CCWGG 3 cut(s) 171, 309, 620
PspN4I GGNNCC 3 cut(s) 49, 177, 582
PspPI GGNCC 2 cut(s) 856, 918
PspPPI RGGWCCY 1 cut(s) 856
PsuI RGATCY 3 cut(s) 16, 175, 403
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 5 cut(s) 299, 479, 519, 614, 805
RsaNI GTAC 5 cut(s) 298, 478, 518, 613, 804
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 758
SaqAI TTAA 5 cut(s) 125, 149, 186, 554, 704
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 5 cut(s) 16, 175, 276, 376, 403
Sau96I GGNCC 2 cut(s) 856, 918
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 3 cut(s) 173, 311, 622
SduI GDGCHC 1 cut(s) 758
SexAI ACCWGGT 1 cut(s) 309
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 2 cut(s) 267, 938
SinI GGWCC 1 cut(s) 856
SmiMI CAYNNNNRTG 1 cut(s) 464
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 4 cut(s) 97, 126, 187, 219
SseBI AGGCCT 2 cut(s) 386, 837
SsiI CCGC 1 cut(s) 179
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 366, 932
SstI GAGCTC 1 cut(s) 758
StuI AGGCCT 2 cut(s) 386, 837
StyD4I CCNGG 3 cut(s) 171, 309, 620
TaaI ACNGT 5 cut(s) 435, 446, 551, 702, 880
TaiI ACGT 1 cut(s) 798
TaqI TCGA 1 cut(s) 891
TasI AATT 4 cut(s) 97, 126, 187, 219
TatI WGTACW 5 cut(s) 297, 477, 517, 612, 803
TfiI GAWTC 2 cut(s) 7, 729
Tru1I TTAA 5 cut(s) 125, 149, 186, 554, 704
Tru9I TTAA 5 cut(s) 125, 149, 186, 554, 704
TscAI CASTG 2 cut(s) 331, 336
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 589
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 2 cut(s) 331, 336
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 856
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 219
XceI RCATGY 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 2 cut(s) 366, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.