AT1G23840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000475
Physical Location & Seq
Reverse (-)
8424142 .. 8425385
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23840.1

Sequence Viewer

Length: 1017 bp
ATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACTAAAACGAGCTCTTAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCCTCTTTCTTTGCTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTCACTCGCTTCCACATACATCTCCAAACTAGTCAATTCTGAGGAGGACTTGTCGGAGAATGATCTTCTTCCTTGGCTGATTCAGACAACTCTGCTCTACTTCTTTCCCTATACTATTCTTGACCTCCTTACCACCACCACGATCGTTGCAGCATCATCGATTGCTTACACATCTGAGGAAGAGCCGTTAGGGTTGCTTTATTTGGTAGGGAGATCTTTCAAGCTATGTCAGAACAAAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCTTCTCTTGTCGACCTCTGTTTTCCTCGGTTTGTTCTCTGGTTCGACCATCTACTTATATTTTGCTTCTCTCACACTCGAACAACAAATATTCTTTAATCAAGCAGTGGTGCAAGACCAAAGATTCCTTGAACAAGCAGTGGTTCTGTTGGATGTGGTGGTAGTTCTGATTCATGGTACTGTCTTCATAGTTCTGGCTGCAAAGTTCAGCAAGTGGAGCGCGGGATGGAACATTAGTATGGTTGTTTCGGTCTTAGAAGAGGAAGAAGATAGTAAAGGCATCTATGGAAGTAGTGCTCTGTCTCTTTCAGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACTTCTGGATGATGCTAGTGTTCTTGGTCGGCGCTCTTGTGACAAGGATGCCATGTTTATACTACAAATGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAAGTTTGATTTGTGTTGGGAATGTCGTTAAATGGGTTTCTTGTGTTGTTTGGTACCATGATTGTAACACAAGGGTCTTGAGGAAAAAGGGTGACGTGGAGATTGGGTCAAAAGCTTTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.89

Weight (kDa)

5.24

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 942
AccB1I GGYRCC 1 cut(s) 942
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 653
AciI CCGC 1 cut(s) 653
AfaI GTAC 4 cut(s) 610, 749, 875, 944
AflII CTTAAG 2 cut(s) 56, 751
AgsI TTSAA 2 cut(s) 382, 563
AhlI ACTAGT 1 cut(s) 190
AjiI CACGTC 1 cut(s) 985
AluBI AGCT 7 cut(s) 25, 53, 61, 142, 385, 743, 1004
AluI AGCT 7 cut(s) 25, 53, 61, 142, 385, 743, 1004
Alw21I GWGCWC 3 cut(s) 55, 144, 730
Alw26I GTCTC 3 cut(s) 166, 738, 887
ApeKI GCWGC 2 cut(s) 311, 629
Asp718I GGTACC 1 cut(s) 942
AspLEI GCGC 2 cut(s) 653, 806
AsuHPI GGTGA 1 cut(s) 992
BanI GGYRCC 1 cut(s) 942
BanII GRGCYC 2 cut(s) 55, 144
BbsI GAAGAC 1 cut(s) 607
Bbv12I GWGCWC 3 cut(s) 55, 144, 730
BbvI GCAGC 2 cut(s) 323, 616
BccI CCATC 2 cut(s) 488, 651
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 3 cut(s) 166, 738, 887
BcuI ACTAGT 1 cut(s) 190
BfaI CTAG 2 cut(s) 191, 788
BfoI RGCGCY 1 cut(s) 807
BfrI CTTAAG 2 cut(s) 56, 751
BglII AGATCT 1 cut(s) 374
BisI GCNGC 2 cut(s) 312, 630
BlsI GCNGC 2 cut(s) 313, 631
BmgBI CACGTC 1 cut(s) 985
BmiI GGNNCC 1 cut(s) 944
BmsI GCATC 4 cut(s) 323, 720, 774, 810
BpiI GAAGAC 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 988
Bsa29I ATCGAT 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 2 cut(s) 233, 457
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 980, 1010
Bse1I ACTGG 1 cut(s) 883
BseCI ATCGAT 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 233, 457
BseGI GGATG 4 cut(s) 589, 662, 786, 825
BseMII CTCAG 3 cut(s) 192, 327, 845
BseNI ACTGG 1 cut(s) 883
BseRI GAGGAG 2 cut(s) 32, 218
BseXI GCAGC 2 cut(s) 323, 616
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 942
BshVI ATCGAT 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 55, 144, 730
BsmAI GTCTC 3 cut(s) 166, 738, 887
Bso31I GGTCTC 1 cut(s) 887
Bsp1286I GDGCHC 3 cut(s) 55, 144, 730
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 5 cut(s) 129, 223, 303, 374, 414
BspACI CCGC 1 cut(s) 653
BspCNI CTCAG 3 cut(s) 193, 328, 846
BspDI ATCGAT 1 cut(s) 320
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 944
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 942
BspTI CTTAAG 2 cut(s) 56, 751
BspTNI GGTCTC 1 cut(s) 887
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 1 cut(s) 883
BssECI CCNNGG 2 cut(s) 233, 457
BssMI GATC 5 cut(s) 129, 223, 303, 374, 414
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 3 cut(s) 117, 160, 613
Bst6I CTCTTC 3 cut(s) 95, 336, 684
BstAFI CTTAAG 2 cut(s) 56, 751
BstAUI TGTACA 1 cut(s) 873
BstDEI CTNAG 5 cut(s) 26, 201, 336, 685, 854
BstF5I GGATG 4 cut(s) 589, 662, 786, 825
BstFNI CGCG 1 cut(s) 653
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 2 cut(s) 653, 806
BstKTI GATC 5 cut(s) 132, 226, 306, 377, 417
BstMAI GTCTC 3 cut(s) 166, 738, 887
BstMBI GATC 5 cut(s) 129, 223, 303, 374, 414
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 648
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 323, 616
BstV2I GAAGAC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 320
BtrI CACGTC 1 cut(s) 985
BtsCI GGATG 4 cut(s) 589, 662, 786, 825
BtsI GCAGTG 3 cut(s) 543, 576, 850
BtsIMutI CAGTG 6 cut(s) 113, 156, 543, 576, 850, 876
CfoI GCGC 2 cut(s) 653, 806
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 4 cut(s) 609, 748, 874, 943
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 3 cut(s) 605, 825, 947
CviQI GTAC 4 cut(s) 609, 748, 874, 943
DdeI CTNAG 5 cut(s) 26, 201, 336, 685, 854
DpnI GATC 5 cut(s) 131, 225, 305, 376, 416
DpnII GATC 5 cut(s) 129, 223, 303, 374, 414
Eam1104I CTCTTC 3 cut(s) 95, 336, 684
EarI CTCTTC 3 cut(s) 95, 336, 684
Ecl136II GAGCTC 2 cut(s) 53, 142
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 2 cut(s) 55, 144
Eco31I GGTCTC 1 cut(s) 887
Eco53kI GAGCTC 2 cut(s) 53, 142
EcoICRI GAGCTC 2 cut(s) 53, 142
EcoT14I CCWWGG 1 cut(s) 233
EcoT38I GRGCYC 2 cut(s) 55, 144
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 608, 828, 950
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 758, 790
FatI CATG 3 cut(s) 604, 824, 946
FauI CCCGC 1 cut(s) 646
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 2 cut(s) 312, 630
FokI GGATG 4 cut(s) 596, 669, 793, 832
FriOI GRGCYC 2 cut(s) 55, 144
Fsp4HI GCNGC 2 cut(s) 312, 630
FspBI CTAG 2 cut(s) 191, 788
GlaI GCGC 2 cut(s) 652, 805
GluI GCNGC 2 cut(s) 312, 630
HaeII RGCGCY 1 cut(s) 807
HhaI GCGC 2 cut(s) 653, 806
Hin1II CATG 3 cut(s) 608, 828, 950
Hin6I GCGC 2 cut(s) 651, 804
HinP1I GCGC 2 cut(s) 651, 804
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 3 cut(s) 241, 555, 601
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 2 cut(s) 444, 876
Hpy188I TCNGA 8 cut(s) 202, 217, 246, 337, 393, 414, 600, 855
Hpy188III TCNNGA 4 cut(s) 127, 281, 778, 967
Hpy8I GTNNAC 2 cut(s) 444, 876
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 3 cut(s) 117, 160, 613
HpyCH4IV ACGT 1 cut(s) 984
HpyCH4V TGCA 4 cut(s) 311, 544, 632, 843
HpyF10VI GCNNNNNNNGC 1 cut(s) 648
HpyF3I CTNAG 5 cut(s) 26, 201, 336, 685, 854
HpySE526I ACGT 1 cut(s) 984
Hsp92II CATG 3 cut(s) 608, 828, 950
HspAI GCGC 2 cut(s) 651, 804
KpnI GGTACC 1 cut(s) 946
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 5 cut(s) 129, 223, 303, 374, 414
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 648
LpnPI CCDG 4 cut(s) 456, 611, 763, 864
Lsp1109I GCAGC 2 cut(s) 323, 616
LweI GCATC 4 cut(s) 323, 720, 774, 810
MaeI CTAG 2 cut(s) 191, 788
MaeII ACGT 1 cut(s) 984
MaeIII GTNAC 5 cut(s) 71, 770, 811, 953, 980
MalI GATC 5 cut(s) 131, 225, 305, 376, 416
MboI GATC 5 cut(s) 129, 223, 303, 374, 414
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 3 cut(s) 55, 144, 730
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 2 cut(s) 195, 561
MseI TTAA 4 cut(s) 57, 528, 752, 918
MslI CAYNNNNRTG 1 cut(s) 668
MspCI CTTAAG 2 cut(s) 56, 751
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 648
NdeII GATC 5 cut(s) 129, 223, 303, 374, 414
NlaIII CATG 3 cut(s) 608, 828, 950
NlaIV GGNNCC 1 cut(s) 944
NmuCI GTSAC 3 cut(s) 770, 811, 980
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 3 cut(s) 241, 555, 601
PkrI GCNGC 2 cut(s) 313, 631
Ple19I CGATCG 1 cut(s) 306
Psp124BI GAGCTC 2 cut(s) 55, 144
PspN4I GGNNCC 1 cut(s) 944
PsuI RGATCY 1 cut(s) 374
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 4 cut(s) 610, 749, 875, 944
RsaNI GTAC 4 cut(s) 609, 748, 874, 943
RseI CAYNNNNRTG 1 cut(s) 668
SacI GAGCTC 2 cut(s) 55, 144
SalI GTCGAC 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 4 cut(s) 57, 528, 752, 918
SatI GCNGC 2 cut(s) 312, 630
Sau3AI GATC 5 cut(s) 129, 223, 303, 374, 414
SduI GDGCHC 3 cut(s) 55, 144, 730
SfaNI GCATC 4 cut(s) 323, 720, 774, 810
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 3 cut(s) 56, 751, 967
SmoI CTYRAG 3 cut(s) 56, 751, 967
SpeI ACTAGT 1 cut(s) 190
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 653
SspI AATATT 1 cut(s) 522
SspMI CTAG 2 cut(s) 191, 788
SstI GAGCTC 2 cut(s) 55, 144
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 3 cut(s) 117, 160, 613
TaiI ACGT 1 cut(s) 987
TaqI TCGA 6 cut(s) 36, 138, 320, 443, 476, 510
TaqII GACCGA 1 cut(s) 670
TasI AATT 1 cut(s) 196
TatI WGTACW 1 cut(s) 873
TfiI GAWTC 3 cut(s) 241, 555, 601
Tru1I TTAA 4 cut(s) 57, 528, 752, 918
Tru9I TTAA 4 cut(s) 57, 528, 752, 918
TscAI CASTG 6 cut(s) 120, 163, 543, 576, 850, 883
TseFI GTSAC 3 cut(s) 770, 811, 980
TseI GCWGC 2 cut(s) 311, 629
Tsp45I GTSAC 3 cut(s) 770, 811, 980
TspDTI ATGAA 2 cut(s) 593, 607
TspRI CASTG 6 cut(s) 120, 163, 543, 576, 850, 883
Vha464I CTTAAG 2 cut(s) 56, 751
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 2 cut(s) 191, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.