Rh4DG417200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000475
Physical Location & Seq
Reverse (-)
62605524 .. 62605892
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG417200.1

Sequence Viewer

Length: 369 bp
ATGCTCATATCTGTTACCACTTGGGTTCTATATATCACCATTAGCTTTGCCTTAGTTCAACTTTCCAAACTGATCACGTTCCTCGCTACGGTTACAGCTATTGATTCTGCTTCAAGAATATATAAGGGCGGAGCTGGGAGGTCAATGGGTCTCCGAGATCTTCTTCGAAACTCCATCATCAGAAAAAGGTGGCAGAAGTCTACATGCGCATACATAACCATGCATTGGTTCTCCTCTGTGTCATTGGAGGCTGTTCTCCTCTATGGTAAGGCAGGTCCGTTGCGCTTATTGAGAAATGAGTTCTACATTTCTTCACTCAGGTTGGGGTCTCTTTTGTGCGCGACGAGTACAGCGCGTGGTGGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

10.53

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 225
AccI GTMKAC 1 cut(s) 200
AccII CGCG 2 cut(s) 341, 355
AciI CCGC 1 cut(s) 129
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 88, 225
AgsI TTSAA 2 cut(s) 59, 114
AluBI AGCT 3 cut(s) 45, 98, 134
AluI AGCT 3 cut(s) 45, 98, 134
Alw26I GTCTC 2 cut(s) 155, 333
AspLEI GCGC 4 cut(s) 209, 285, 341, 355
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 275
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 155, 333
BfuAI ACCTGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 166
BsaI GGTCTC 2 cut(s) 155, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 225
BseLI CCNNNNNNNGG 2 cut(s) 88, 225
BseMII CTCAG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 223, 248
BseYI CCCAGC 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 341, 355
BslI CCNNNNNNNGG 2 cut(s) 88, 225
BsmAI GTCTC 2 cut(s) 155, 333
Bso31I GGTCTC 2 cut(s) 155, 333
Bsp119I TTCGAA 1 cut(s) 166
Bsp143I GATC 2 cut(s) 72, 157
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 330
BspFNI CGCG 2 cut(s) 341, 355
BspMI ACCTGC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 166
BspTNI GGTCTC 2 cut(s) 155, 333
BssMI GATC 2 cut(s) 72, 157
Bst4CI ACNGT 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 52, 317
BstFNI CGCG 2 cut(s) 341, 355
BstHHI GCGC 4 cut(s) 209, 285, 341, 355
BstKTI GATC 2 cut(s) 75, 160
BstMAI GTCTC 2 cut(s) 155, 333
BstMBI GATC 2 cut(s) 72, 157
BstNSI RCATGY 1 cut(s) 207
BstUI CGCG 2 cut(s) 341, 355
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BveI ACCTGC 1 cut(s) 263
CfoI GCGC 4 cut(s) 209, 285, 341, 355
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 348
CviAII CATG 2 cut(s) 204, 220
CviJI RGCY 4 cut(s) 45, 98, 134, 251
CviKI_1 RGCY 4 cut(s) 45, 98, 134, 251
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 2 cut(s) 52, 317
DpnI GATC 2 cut(s) 74, 159
DpnII GATC 2 cut(s) 72, 157
EciI GGCGGA 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 155, 333
Eco47I GGWCC 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 2 cut(s) 207, 223
FatI CATG 2 cut(s) 203, 219
FbaI TGATCA 1 cut(s) 72
FblI GTMKAC 1 cut(s) 200
FspAI RTGCGCAY 1 cut(s) 208
FspI TGCGCA 1 cut(s) 208
GlaI GCGC 4 cut(s) 208, 284, 340, 354
GsaI CCCAGC 1 cut(s) 138
HhaI GCGC 4 cut(s) 209, 285, 341, 355
Hin1II CATG 2 cut(s) 207, 223
Hin6I GCGC 4 cut(s) 207, 283, 339, 353
HinP1I GCGC 4 cut(s) 207, 283, 339, 353
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 155, 182
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 52, 317
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 2 cut(s) 207, 223
HspAI GCGC 4 cut(s) 207, 283, 339, 353
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 72, 157
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 120, 258, 304
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 13, 91
MalI GATC 2 cut(s) 74, 159
MboI GATC 2 cut(s) 72, 157
MboII GAAGA 3 cut(s) 152, 155, 303
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 364
MnlI CCTC 5 cut(s) 92, 132, 241, 244, 269
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 1 cut(s) 367
MslI CAYNNNNRTG 1 cut(s) 218
MvnI CGCG 2 cut(s) 341, 355
NdeII GATC 2 cut(s) 72, 157
NlaIII CATG 2 cut(s) 207, 223
NsbI TGCGCA 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 207
NspV TTCGAA 1 cut(s) 166
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 367
Sau3AI GATC 2 cut(s) 72, 157
Sau96I GGNCC 1 cut(s) 275
SetI ASST 8 cut(s) 47, 80, 100, 136, 143, 191, 277, 323
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 364
SsiI CCGC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 166
TasI AATT 1 cut(s) 364
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 275
XceI RCATGY 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.