FvH4_4g34711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32330817 .. 32333195
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34711.t1

Sequence Viewer

Length: 1407 bp
ATGGATCCCGAGCAGATGAAGCTATTGTTTCTTGGCACGTTTGCCATAATCATATCAGCTATGAAAATCCCCTTCAGAAATCCCAATTTCATAACCTTCACTTTGATTACCTCAATTCCACTATTTTTCATAACGTTACTCCCACAACTACCTCTTGTTCAGGACCAGATTATTGATTTTTCCATAGAGGTATTAGTGAAGCGAAAAATTGTTACTTACAGCAGCATAGAGACCACTCAGGAAGATTTGTCATGGCCTGAAGAATTGACCATTCAGTTTCTGAAAATGTACATTGTTGACATGGTCAACTTCCTCACTGCATTTACAACCATCTATGCTTCCTCAACAATCCATACTAGTATTGGTGATCACAAGGCCTCAATGAGTGTCACAGATCTTCTGAAAAACTCCATAACCAAATCAAGATGGCGCGACGCTGTTTTCATGTTCATTGCCATGTCCATGTTGCACAGTGTCTGTTTACCTTATGTGTTCTATGCTATTCATGTACAACCTGCTGTGACATTTGCTATATGGGTGGAATACAATGCCTGGTGGAAGCTAAGTGTTGTTGTGTCCATTTTAGAGTTACAGCAGAGAGGATTTCAAGCATTTTCAACCTCATCACAGTTGATCAAAGGAGATAAACTACGAGGATTCGTGTTGATGCTTCTTCTGAGTTTCAGCACCATAAAGACCGTTCGAGCTGTAGAAGTAGAACCCCCGATTCCCAAGGTGTACATTGGTGACTTGATCAACTTCCTCACTGCACTCGCAACCATTTGTGCTTCCTCAACAATCCACACTACTAGTGACGGTGATCATAAGGCCTCAATGGGTCTCAGACATCTTCTGAGAAACACCATAACCAGATCACTTGGGCGCGATGGTGTTTTCACATTCATTGCTATGTCTATGTTGCACCATATCTGTTTACCTTATGTGGCCTATTGTATTCATGTACAACAGCTGCATTTATCAAGCTTTACAGACAGTTTGATCTTCAAGTCTGTACATGTTATGGTTCCTGCTGTGACATTTGCAATATGGGTGGAATACAATGCCTGGTGGAAGCTAAGTGTTGTTGCGTCCATTTTACAGTTAGAGGAGCAGAGAGGATTATTTCGAGCATTTTCAACCTCATCACAGTTAATGAAAGGAGATAAGCTACGGGGATTCGTCTTGATGCTTCTTCTTAAGAGCTTGGATTGGCCAACCACTCGAGCACCGAGTTCTAATTTGCCAATCTTCAGAGGACACAGTCTTTTTAAGTGCACAAATTTTGCACATGTTTTTCTTCAAGCAAGCCTATTGTGTTTGGGGAAGGTCATGACTTGGATGGTTTTCACAGTTTATTACTTTGATTGTAAGAATCGTCAGCAGAAAAGGTTGTCATTTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

53.39

Weight (kDa)

9.27

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 523
AccII CGCG 2 cut(s) 432, 885
AclI AACGTT 1 cut(s) 134
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 1211
AcsI RAATTY 1 cut(s) 1279
AcuI CTGAAG 3 cut(s) 58, 279, 1234
AfaI GTAC 5 cut(s) 290, 510, 740, 963, 1014
AflII CTTAAG 1 cut(s) 1196
AflIII ACRYGT 2 cut(s) 1015, 1288
AgsI TTSAA 5 cut(s) 608, 618, 1006, 1137, 1301
AhlI ACTAGT 2 cut(s) 356, 809
AjnI CCWGG 2 cut(s) 551, 1064
AluBI AGCT 9 cut(s) 22, 59, 562, 707, 970, 984, 1075, 1168, 1203
AluI AGCT 9 cut(s) 22, 59, 562, 707, 970, 984, 1075, 1168, 1203
Alw21I GWGCWC 2 cut(s) 1228, 1277
Alw26I GTCTC 2 cut(s) 224, 845
Alw44I GTGCAC 1 cut(s) 1273
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 280, 477
Ama87I CYCGRG 2 cut(s) 8, 1221
AoxI GGCC 5 cut(s) 254, 375, 828, 945, 1211
ApaLI GTGCAC 1 cut(s) 1273
ApeKI GCWGC 2 cut(s) 222, 970
ApoI RAATTY 1 cut(s) 1279
AspLEI GCGC 2 cut(s) 432, 885
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 377, 758, 830
AvaI CYCGRG 2 cut(s) 8, 1221
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 1277
BalI TGGCCA 1 cut(s) 1213
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 1228, 1277
BbvI GCAGC 2 cut(s) 234, 957
BccI CCATC 4 cut(s) 338, 420, 881, 1333
BciT130I CCWGG 2 cut(s) 553, 1066
BclI TGATCA 4 cut(s) 367, 633, 753, 820
BcoDI GTCTC 2 cut(s) 224, 845
BcuI ACTAGT 2 cut(s) 356, 809
BfaI CTAG 2 cut(s) 357, 810
BfmI CTRYAG 1 cut(s) 708
BfrI CTTAAG 1 cut(s) 1196
BfuAI ACCTGC 1 cut(s) 523
BglII AGATCT 1 cut(s) 394
BisI GCNGC 2 cut(s) 223, 971
BlsI GCNGC 2 cut(s) 224, 972
Bme1390I CCNGG 2 cut(s) 553, 1066
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 2 cut(s) 8, 1221
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 6, 1026
BmrFI CCNGG 2 cut(s) 553, 1066
BmsI GCATC 2 cut(s) 657, 1176
BsaI GGTCTC 2 cut(s) 224, 845
BsaJI CCNNGG 1 cut(s) 732
Bse3DI GCAATG 2 cut(s) 450, 903
BseBI CCWGG 2 cut(s) 553, 1066
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 1 cut(s) 1344
BseMI GCAATG 2 cut(s) 450, 903
BseMII CTCAG 4 cut(s) 251, 668, 845, 856
BseRI GAGGAG 1 cut(s) 1121
BseSI GKGCMC 1 cut(s) 1277
BseXI GCAGC 2 cut(s) 234, 957
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 2 cut(s) 432, 885
BshFI GGCC 5 cut(s) 256, 377, 830, 947, 1213
BsiHKAI GWGCWC 2 cut(s) 1228, 1277
BsiHKCI CYCGRG 2 cut(s) 8, 1221
BsmAI GTCTC 2 cut(s) 224, 845
BsnI GGCC 5 cut(s) 256, 377, 830, 947, 1213
Bso31I GGTCTC 2 cut(s) 224, 845
BsoBI CYCGRG 2 cut(s) 8, 1221
Bsp1286I GDGCHC 2 cut(s) 1228, 1277
Bsp1407I TGTACA 5 cut(s) 288, 508, 738, 961, 1012
Bsp143I GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
BspANI GGCC 5 cut(s) 256, 377, 830, 947, 1213
BspCNI CTCAG 4 cut(s) 250, 669, 846, 855
BspFNI CGCG 2 cut(s) 432, 885
BspHI TCATGA 1 cut(s) 1329
BspLI GGNNCC 2 cut(s) 6, 1026
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 1196
BspTNI GGTCTC 2 cut(s) 224, 845
BsrDI GCAATG 2 cut(s) 450, 903
BsrGI TGTACA 5 cut(s) 288, 508, 738, 961, 1012
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
BssT1I CCWWGG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 553, 1066
Bst4CI ACNGT 9 cut(s) 473, 630, 700, 818, 995, 1101, 1149, 1262, 1351
BstAFI CTTAAG 1 cut(s) 1196
BstAUI TGTACA 5 cut(s) 288, 508, 738, 961, 1012
BstC8I GCNNGC 1 cut(s) 1306
BstDEI CTNAG 6 cut(s) 237, 563, 677, 842, 854, 1076
BstF5I GGATG 1 cut(s) 1344
BstFNI CGCG 2 cut(s) 432, 885
BstHHI GCGC 2 cut(s) 432, 885
BstKTI GATC 8 cut(s) 7, 370, 397, 636, 756, 823, 875, 1002
BstMAI GTCTC 2 cut(s) 224, 845
BstMBI GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 2 cut(s) 553, 1066
BstNSI RCATGY 2 cut(s) 1019, 1292
BstSCI CCNGG 2 cut(s) 551, 1064
BstSFI CTRYAG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 1277
BstUI CGCG 2 cut(s) 432, 885
BstV1I GCAGC 2 cut(s) 234, 957
BstX2I RGATCY 2 cut(s) 4, 394
BstYI RGATCY 2 cut(s) 4, 394
BsuRI GGCC 5 cut(s) 256, 377, 830, 947, 1213
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 1 cut(s) 1344
BtsI GCAGTG 2 cut(s) 315, 765
BtsIMutI CAGTG 3 cut(s) 315, 478, 765
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 1306
CaiI CAGNNNCTG 2 cut(s) 280, 477
CciI TCATGA 1 cut(s) 1329
CfoI GCGC 2 cut(s) 432, 885
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 2 cut(s) 443, 1077
Csp6I GTAC 5 cut(s) 289, 509, 739, 962, 1013
CspCI CAANNNNNGTGG 2 cut(s) 1032, 1067
CviQI GTAC 5 cut(s) 289, 509, 739, 962, 1013
DdeI CTNAG 6 cut(s) 237, 563, 677, 842, 854, 1076
DpnI GATC 8 cut(s) 6, 369, 396, 635, 755, 822, 874, 1001
DpnII GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
EaeI YGGCCR 1 cut(s) 1211
Eco130I CCWWGG 1 cut(s) 732
Eco147I AGGCCT 2 cut(s) 377, 830
Eco31I GGTCTC 2 cut(s) 224, 845
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 58, 279, 1234
Eco88I CYCGRG 2 cut(s) 8, 1221
EcoRII CCWGG 2 cut(s) 551, 1064
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
FbaI TGATCA 4 cut(s) 367, 633, 753, 820
Fnu4HI GCNGC 2 cut(s) 223, 971
FokI GGATG 1 cut(s) 1351
Fsp4HI GCNGC 2 cut(s) 223, 971
FspBI CTAG 2 cut(s) 357, 810
GlaI GCGC 2 cut(s) 431, 884
GluI GCNGC 2 cut(s) 223, 971
HaeIII GGCC 5 cut(s) 256, 377, 830, 947, 1213
HgaI GACGC 2 cut(s) 443, 1077
HhaI GCGC 2 cut(s) 432, 885
Hin6I GCGC 2 cut(s) 430, 883
HinP1I GCGC 2 cut(s) 430, 883
HincII GTYRAC 2 cut(s) 298, 307
HindII GTYRAC 2 cut(s) 298, 307
HindIII AAGCTT 1 cut(s) 982
HinfI GANTC 4 cut(s) 657, 727, 1176, 1372
HphI GGTGA 3 cut(s) 377, 758, 830
Hpy166II GTNNAC 6 cut(s) 298, 307, 482, 739, 935, 1275
Hpy188I TCNGA 7 cut(s) 77, 282, 402, 678, 845, 855, 1253
Hpy188III TCNNGA 6 cut(s) 8, 161, 239, 423, 1183, 1330
Hpy8I GTNNAC 6 cut(s) 298, 307, 482, 739, 935, 1275
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 82, 106, 1318
HpyCH4III ACNGT 9 cut(s) 473, 630, 700, 818, 995, 1101, 1149, 1262, 1351
HpyCH4IV ACGT 2 cut(s) 38, 134
HpyCH4V TGCA 8 cut(s) 320, 469, 770, 922, 973, 1043, 1275, 1286
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 6 cut(s) 237, 563, 677, 842, 854, 1076
HpySE526I ACGT 2 cut(s) 38, 134
HspAI GCGC 2 cut(s) 430, 883
Ksp22I TGATCA 4 cut(s) 367, 633, 753, 820
Kzo9I GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 2 cut(s) 234, 957
LweI GCATC 2 cut(s) 657, 1176
MaeI CTAG 2 cut(s) 357, 810
MaeII ACGT 2 cut(s) 38, 134
MaeIII GTNAC 8 cut(s) 135, 211, 388, 520, 588, 746, 812, 1033
MalI GATC 8 cut(s) 6, 369, 396, 635, 755, 822, 874, 1001
MboI GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
MboII GAAGA 9 cut(s) 254, 272, 389, 665, 842, 994, 1184, 1240, 1289
MflI RGATCY 2 cut(s) 4, 394
MhlI GDGCHC 2 cut(s) 1228, 1277
MlsI TGGCCA 1 cut(s) 1213
MluCI AATT 6 cut(s) 85, 114, 207, 263, 1237, 1279
MluNI TGGCCA 1 cut(s) 1213
Mox20I TGGCCA 1 cut(s) 1213
MscI TGGCCA 1 cut(s) 1213
MseI TTAA 4 cut(s) 1151, 1197, 1269, 1405
MslI CAYNNNNRTG 3 cut(s) 455, 461, 908
Msp20I TGGCCA 1 cut(s) 1213
MspA1I CMGCKG 1 cut(s) 970
MspCI CTTAAG 1 cut(s) 1196
MspR9I CCNGG 2 cut(s) 553, 1066
MvaI CCWGG 2 cut(s) 553, 1066
MvnI CGCG 2 cut(s) 432, 885
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
NlaIV GGNNCC 2 cut(s) 6, 1026
NmuCI GTSAC 5 cut(s) 388, 520, 746, 812, 1033
NspI RCATGY 2 cut(s) 1019, 1292
PaeR7I CTCGAG 1 cut(s) 1221
PagI TCATGA 1 cut(s) 1329
PceI AGGCCT 2 cut(s) 377, 830
PciI ACATGT 2 cut(s) 1015, 1288
PfeI GAWTC 4 cut(s) 657, 727, 1176, 1372
PflFI GACNNNGTC 2 cut(s) 302, 1260
PkrI GCNGC 2 cut(s) 224, 972
PscI ACATGT 2 cut(s) 1015, 1288
Psp1406I AACGTT 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 551, 1064
PspGI CCWGG 2 cut(s) 551, 1064
PspN4I GGNNCC 2 cut(s) 6, 1026
PspPI GGNCC 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 1221
PstNI CAGNNNCTG 2 cut(s) 280, 477
PsuI RGATCY 2 cut(s) 4, 394
PsyI GACNNNGTC 2 cut(s) 302, 1260
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 5 cut(s) 290, 510, 740, 963, 1014
RsaNI GTAC 5 cut(s) 289, 509, 739, 962, 1013
RseI CAYNNNNRTG 3 cut(s) 455, 461, 908
SaqAI TTAA 4 cut(s) 1151, 1197, 1269, 1405
SatI GCNGC 2 cut(s) 223, 971
Sau3AI GATC 8 cut(s) 4, 367, 394, 633, 753, 820, 872, 999
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 553, 1066
SduI GDGCHC 2 cut(s) 1228, 1277
SfaNI GCATC 2 cut(s) 657, 1176
SfcI CTRYAG 1 cut(s) 708
Sfr274I CTCGAG 1 cut(s) 1221
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 1221
SmiMI CAYNNNNRTG 3 cut(s) 455, 461, 908
SmlI CTYRAG 2 cut(s) 1196, 1221
SmoI CTYRAG 2 cut(s) 1196, 1221
SpeI ACTAGT 2 cut(s) 356, 809
Sse9I AATT 6 cut(s) 85, 114, 207, 263, 1237, 1279
SseBI AGGCCT 2 cut(s) 377, 830
SspMI CTAG 2 cut(s) 357, 810
StuI AGGCCT 2 cut(s) 377, 830
StyD4I CCNGG 2 cut(s) 551, 1064
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 9 cut(s) 473, 630, 700, 818, 995, 1101, 1149, 1262, 1351
TaiI ACGT 2 cut(s) 41, 137
TaqI TCGA 3 cut(s) 703, 1126, 1222
TasI AATT 6 cut(s) 85, 114, 207, 263, 1237, 1279
TatI WGTACW 5 cut(s) 288, 508, 738, 961, 1012
TfiI GAWTC 4 cut(s) 657, 727, 1176, 1372
Tru1I TTAA 4 cut(s) 1151, 1197, 1269, 1405
Tru9I TTAA 4 cut(s) 1151, 1197, 1269, 1405
TscAI CASTG 3 cut(s) 322, 478, 772
TseFI GTSAC 5 cut(s) 388, 520, 746, 812, 1033
TseI GCWGC 2 cut(s) 222, 970
Tsp45I GTSAC 5 cut(s) 388, 520, 746, 812, 1033
TspRI CASTG 3 cut(s) 322, 478, 772
Tth111I GACNNNGTC 2 cut(s) 302, 1260
Vha464I CTTAAG 1 cut(s) 1196
VneI GTGCAC 1 cut(s) 1273
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 1279
XceI RCATGY 2 cut(s) 1019, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XhoI CTCGAG 1 cut(s) 1221
XspI CTAG 2 cut(s) 357, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.