MD13G1090000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000475
Physical Location & Seq
Forward (+)
6339936 .. 6340997
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1090000.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGATGTGCTTTGGATTATCAGAAACCTTCAATTGTGAGTGGATCGAACTTGGAAGCGAACCCATGGAAATGGAAAGCTATCTTGTGATGAAGAATCAGAAGCTGGAAGCCTCCGGTATTCTCAGGAAAGCTCTTATAATCCCTGCCAGAAACATCAAATTCTTAACTTTCACAATCCTCACCTCCCTTCCTCTCTTCTGTTTCCTGATTTACTATGAATCCCATCTCCAGAAAATCATGGTTGAAACCTTGAAAACCCTAAACCTGCCGCCGCGTGAGGCCGGCATGAACCGCTACTTGACTTACTTCAGGTTGAGTTGGTCCATTCCAGTTGAGGTATCCAGAAAATTGAACCGAGATTTTCCCAATGAGTTATTTTATCTGGGGTTTCTCTTTGTGGTGCCTCTTCATCTCCTCCATTTCGTAACTGCGATTCCGATCGTTTACTTGGGATCTAAGATACACACAGAAGAGAGTCCAGTGATGACTATAAGAGAAATGGTGAAAAAAACCTTTGACAAAACAAGGCTGAAGGGAACTTTTGTAACATTTTCTTATGTCCTTGTGTTGTCAAGTTATACTCTGCTAGGGCTGACATGGCTAGGAATAACCTACTATGCTGTCTTCCGAAACTTCAATGATTTCGATGCTTTGTTCTATGCTGTACTGTGTTGGCCGGCATTTGTAGGGGTTGTGGTAATGTATTTGGCATGGAGTTCTGTGTGGAATGTGAGTGTTGTGATTTCGATACTGGATGGGGCGGGCGGAATCAAGCCGTTTGGTCAGGCGATATATTTGAGCAGCGGATGTGAGTGGAAAGGGTTTAGTTTGATGCTCATTTTCTTTTTCTGGGAAATAAGTTTGAGGTTGCCTTGCCTCTATTCCGGCTGCTACAAAAGCAGGAATTATTTTGGTGGTATTATTGCACAGGTTTGCTTGTTCTGCTTTGGGAATGTGCTGAAGTGGATTGTCTGCATGATATATTTCTACGATTGCAAGAATCGCGCGGTGGAGAAGAAATTGAAGATGCAGGCTAAGAAGAGAGGTGAAAGCAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

40.8

Weight (kDa)

9.05

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 400
AccII CGCG 3 cut(s) 274, 1005, 1007
AciI CCGC 7 cut(s) 269, 272, 292, 761, 765, 804, 1007
AclWI GGATC 2 cut(s) 50, 460
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 3 cut(s) 292, 551, 980
AfaI GTAC 1 cut(s) 666
AgsI TTSAA 6 cut(s) 31, 245, 253, 352, 637, 1024
AluBI AGCT 3 cut(s) 78, 103, 131
AluI AGCT 3 cut(s) 78, 103, 131
AlwI GGATC 2 cut(s) 50, 460
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 2 cut(s) 279, 674
ApeKI GCWGC 2 cut(s) 801, 888
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 172, 514, 1058
AvaII GGWCC 1 cut(s) 321
BanI GGYRCC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 813, 875
BccI CCATC 2 cut(s) 231, 749
BceAI ACGGC 1 cut(s) 760
BciVI GTATCC 1 cut(s) 349
BfaI CTAG 2 cut(s) 587, 602
BfuAI ACCTGC 1 cut(s) 273
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 4 cut(s) 269, 272, 802, 889
BlsI GCNGC 4 cut(s) 270, 273, 803, 890
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 402
BmsI GCATC 3 cut(s) 637, 822, 1017
BpiI GAAGAC 1 cut(s) 616
BpmI CTGGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 113
Bse118I RCCGGY 2 cut(s) 281, 676
Bse1I ACTGG 3 cut(s) 329, 479, 756
Bse3DI GCAATG 1 cut(s) 1060
Bse8I GATNNNNATC 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 760, 812
BseJI GATNNNNATC 1 cut(s) 437
BseMI GCAATG 1 cut(s) 1060
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 3 cut(s) 329, 479, 756
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 813, 875
Bsh1236I CGCG 3 cut(s) 274, 1005, 1007
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 2 cut(s) 281, 676
BshNI GGYRCC 1 cut(s) 400
BsiEI CGRYCG 1 cut(s) 441
BsiSI CCGG 4 cut(s) 114, 282, 677, 885
BsnI GGCC 2 cut(s) 281, 676
Bsp143I GATC 3 cut(s) 42, 438, 452
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 7 cut(s) 269, 272, 292, 761, 765, 804, 1007
BspANI GGCC 2 cut(s) 281, 676
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 3 cut(s) 274, 1005, 1007
BspLI GGNNCC 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 50, 460
BspT107I GGYRCC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 1060
BsrFI RCCGGY 2 cut(s) 281, 676
BsrI ACTGG 3 cut(s) 329, 479, 756
BssAI RCCGGY 2 cut(s) 281, 676
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 42, 438, 452
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 669
Bst6I CTCTTC 4 cut(s) 200, 411, 465, 1034
BstC8I GCNNGC 4 cut(s) 283, 678, 763, 1032
BstDEI CTNAG 3 cut(s) 122, 456, 1035
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 760, 812
BstFNI CGCG 3 cut(s) 274, 1005, 1007
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 3 cut(s) 45, 441, 455
BstMBI GATC 3 cut(s) 42, 438, 452
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 5 cut(s) 291, 598, 897, 942, 1002
BstUI CGCG 3 cut(s) 274, 1005, 1007
BstV1I GCAGC 2 cut(s) 813, 875
BstV2I GAAGAC 1 cut(s) 616
BstX2I RGATCY 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 452
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 281, 676
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 760, 812
BtsIMutI CAGTG 1 cut(s) 486
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 4 cut(s) 283, 678, 763, 1032
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 1 cut(s) 1007
Cfr10I RCCGGY 2 cut(s) 281, 676
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 665
CviAII CATG 6 cut(s) 64, 238, 286, 597, 711, 976
CviQI GTAC 1 cut(s) 665
DdeI CTNAG 3 cut(s) 122, 456, 1035
DpnI GATC 3 cut(s) 44, 440, 454
DpnII GATC 3 cut(s) 42, 438, 452
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 4 cut(s) 200, 411, 465, 1034
EarI CTCTTC 4 cut(s) 200, 411, 465, 1034
EciI GGCGGA 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 321
Eco57I CTGAAG 3 cut(s) 292, 551, 980
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 6 cut(s) 67, 241, 289, 600, 714, 979
FatI CATG 6 cut(s) 63, 237, 285, 596, 710, 975
FauI CCCGC 1 cut(s) 754
Fnu4HI GCNGC 4 cut(s) 269, 272, 802, 889
FokI GGATG 2 cut(s) 767, 819
Fsp4HI GCNGC 4 cut(s) 269, 272, 802, 889
FspBI CTAG 2 cut(s) 587, 602
GlaI GCGC 1 cut(s) 1006
GluI GCNGC 4 cut(s) 269, 272, 802, 889
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 2 cut(s) 281, 676
HapII CCGG 4 cut(s) 114, 282, 677, 885
HhaI GCGC 1 cut(s) 1007
Hin1II CATG 6 cut(s) 67, 241, 289, 600, 714, 979
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HinfI GANTC 6 cut(s) 94, 218, 433, 475, 768, 1000
HpaII CCGG 4 cut(s) 114, 282, 677, 885
HphI GGTGA 3 cut(s) 172, 514, 1058
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 4 cut(s) 22, 99, 438, 629
Hpy188III TCNNGA 4 cut(s) 124, 205, 229, 342
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 3 cut(s) 37, 197, 526
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4V TGCA 4 cut(s) 926, 975, 996, 1030
HpyF10VI GCNNNNNNNGC 5 cut(s) 291, 598, 897, 942, 1002
HpyF3I CTNAG 3 cut(s) 122, 456, 1035
Hsp92II CATG 6 cut(s) 67, 241, 289, 600, 714, 979
HspAI GCGC 1 cut(s) 1005
KroI GCCGGC 2 cut(s) 281, 676
KroNI GCCGGC 2 cut(s) 283, 678
Kzo9I GATC 3 cut(s) 42, 438, 452
Lsp1109I GCAGC 2 cut(s) 813, 875
LweI GCATC 3 cut(s) 637, 822, 1017
MaeI CTAG 2 cut(s) 587, 602
MaeIII GTNAC 2 cut(s) 424, 544
MalI GATC 3 cut(s) 44, 440, 454
MboI GATC 3 cut(s) 42, 438, 452
MboII GAAGA 8 cut(s) 103, 187, 398, 482, 616, 1027, 1036, 1051
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 452
MluCI AATT 5 cut(s) 31, 158, 347, 904, 1019
MlyI GAGTC 1 cut(s) 484
MroNI GCCGGC 2 cut(s) 281, 676
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 804
MspI CCGG 4 cut(s) 114, 282, 677, 885
MunI CAATTG 1 cut(s) 31
MvnI CGCG 3 cut(s) 274, 1005, 1007
MwoI GCNNNNNNNGC 5 cut(s) 291, 598, 897, 942, 1002
NaeI GCCGGC 2 cut(s) 283, 678
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 42, 438, 452
NgoMIV GCCGGC 2 cut(s) 281, 676
NlaIII CATG 6 cut(s) 67, 241, 289, 600, 714, 979
NlaIV GGNNCC 1 cut(s) 402
PdiI GCCGGC 2 cut(s) 283, 678
PfeI GAWTC 5 cut(s) 94, 218, 433, 768, 1000
PkrI GCNGC 4 cut(s) 270, 273, 803, 890
Ple19I CGATCG 1 cut(s) 441
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
PsiI TTATAA 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 452
PvuI CGATCG 1 cut(s) 441
RsaI GTAC 1 cut(s) 666
RsaNI GTAC 1 cut(s) 665
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 269, 272, 802, 889
Sau3AI GATC 3 cut(s) 42, 438, 452
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 484
SfaNI GCATC 3 cut(s) 637, 822, 1017
SinI GGWCC 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 5 cut(s) 31, 158, 347, 904, 1019
SsiI CCGC 7 cut(s) 269, 272, 292, 761, 765, 804, 1007
SspMI CTAG 2 cut(s) 587, 602
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 669
TaqI TCGA 3 cut(s) 45, 645, 746
TasI AATT 5 cut(s) 31, 158, 347, 904, 1019
TatI WGTACW 1 cut(s) 664
TauI GCSGC 2 cut(s) 271, 274
TfiI GAWTC 5 cut(s) 94, 218, 433, 768, 1000
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 486
TseI GCWGC 2 cut(s) 801, 888
TspDTI ATGAA 4 cut(s) 104, 231, 302, 398
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 321
XapI RAATTY 1 cut(s) 158
XspI CTAG 2 cut(s) 587, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.