FvH4_6g20520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000475
Physical Location & Seq
Forward (+)
14123835 .. 14124860
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20520.t1

Sequence Viewer

Length: 657 bp
ATGGAGGTTTTGAGCTTAGTTGGAAGTGATAGCATTAGCATGGAGATGGAGAGCAACATGTATAATGAAGACAGGCAAATGACTCTGAAGGAGATGGTACATAATCAACCTTTCGACAAAAACAGACTGATAGCTTCTCTCATCACATCTGTCTATGTTCTCGTCTTGTCGACCTGTAGTGTTATACTTGGATTCATATGGTCAGCTGCAAGCTACTATTTTGTATTCAGGTACTTACTGCATGATGTACTCTTATCTTTATGGTGTTTGGTAGCATGTCTAGCACTCCTAACAATATATTTGGCATGGAATGCTATATGGAATATGATTATTTTGATTTCGATATTGGAGGGGTTACATGGAACCAAGGCGTTTGGTCTAGCGATTTATGTAAGCTTTGGCAACGAGTGGGCAGGGTTTCTTTTGATGCTGATTTTCTTTGCTTCGGAAGTTAGTTTAAGGTTGCCATGTCTCTATTTTGGCTGCAAAGAAAGATGGAATCCAATTTATGTTGCAGAAATTAGCTTATTGTGCTTTGGAAATGTGCTTAAGTGGGTCGTCTTCAACATTTATTTGCACGATTGCAAGAACTGGATTGTAGAGAAGAGGTTGTTGATCAAGGCTAAGAACAGTGCTGGTGAGCAAAGCTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.98

Weight (kDa)

6.07

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 3 cut(s) 99, 233, 249
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 1 cut(s) 565
AluBI AGCT 7 cut(s) 15, 134, 206, 213, 396, 525, 648
AluI AGCT 7 cut(s) 15, 134, 206, 213, 396, 525, 648
Alw26I GTCTC 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 206, 483
AsuHPI GGTGA 1 cut(s) 650
BbsI GAAGAC 2 cut(s) 75, 553
BbvI GCAGC 2 cut(s) 193, 470
BccI CCATC 3 cut(s) 40, 88, 489
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 2 cut(s) 281, 380
BfmI CTRYAG 1 cut(s) 175
BfrI CTTAAG 1 cut(s) 548
BisI GCNGC 2 cut(s) 207, 484
BlsI GCNGC 2 cut(s) 208, 485
BmiI GGNNCC 1 cut(s) 364
BmsI GCATC 1 cut(s) 417
BpiI GAAGAC 2 cut(s) 75, 553
BsaJI CCNNGG 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 596
BseXI GCAGC 2 cut(s) 193, 470
BsmAI GTCTC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 364
BspTI CTTAAG 1 cut(s) 548
BsrI ACTGG 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 632
Bst6I CTCTTC 1 cut(s) 599
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 16, 624
BstKTI GATC 1 cut(s) 618
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 1 cut(s) 615
BstMWI GCNNNNNNNGC 3 cut(s) 281, 311, 531
BstNSI RCATGY 2 cut(s) 61, 279
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 193, 470
BstV2I GAAGAC 2 cut(s) 75, 553
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 1 cut(s) 211
Csp6I GTAC 3 cut(s) 98, 232, 248
CviAII CATG 7 cut(s) 40, 58, 242, 276, 306, 359, 468
CviJI RGCY 9 cut(s) 15, 134, 206, 213, 396, 483, 525, 623, 648
CviKI_1 RGCY 9 cut(s) 15, 134, 206, 213, 396, 483, 525, 623, 648
CviQI GTAC 3 cut(s) 98, 232, 248
DdeI CTNAG 2 cut(s) 16, 624
DpnI GATC 1 cut(s) 617
DpnII GATC 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 599
EarI CTCTTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 7 cut(s) 43, 61, 245, 279, 309, 362, 471
FatI CATG 7 cut(s) 39, 57, 241, 275, 305, 358, 467
FauNDI CATATG 1 cut(s) 197
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 2 cut(s) 207, 484
Fsp4HI GCNGC 2 cut(s) 207, 484
FspBI CTAG 2 cut(s) 281, 380
GluI GCNGC 2 cut(s) 207, 484
Hin1II CATG 7 cut(s) 43, 61, 245, 279, 309, 362, 471
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 394
HinfI GANTC 3 cut(s) 82, 192, 499
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 87, 448
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 632
HpyCH4V TGCA 6 cut(s) 209, 241, 486, 515, 577, 585
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 311, 531
HpyF3I CTNAG 2 cut(s) 16, 624
Hsp92II CATG 7 cut(s) 43, 61, 245, 279, 309, 362, 471
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 1 cut(s) 615
LpnPI CCDG 6 cut(s) 58, 187, 214, 399, 577, 621
Lsp1109I GCAGC 2 cut(s) 193, 470
LweI GCATC 1 cut(s) 417
MaeI CTAG 2 cut(s) 281, 380
MaeIII GTNAC 1 cut(s) 354
MalI GATC 1 cut(s) 617
MboI GATC 1 cut(s) 615
MboII GAAGA 3 cut(s) 80, 553, 616
MluCI AATT 2 cut(s) 504, 519
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 2 cut(s) 343, 600
MseI TTAA 2 cut(s) 458, 549
MslI CAYNNNNRTG 2 cut(s) 38, 44
MspA1I CMGCKG 1 cut(s) 206
MspCI CTTAAG 1 cut(s) 548
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 281, 311, 531
NdeI CATATG 1 cut(s) 197
NdeII GATC 1 cut(s) 615
NlaIII CATG 7 cut(s) 43, 61, 245, 279, 309, 362, 471
NlaIV GGNNCC 1 cut(s) 364
NspI RCATGY 2 cut(s) 61, 279
PciI ACATGT 1 cut(s) 57
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 192, 499
PkrI GCNGC 2 cut(s) 208, 485
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PscI ACATGT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 3 cut(s) 99, 233, 249
RsaNI GTAC 3 cut(s) 98, 232, 248
RseI CAYNNNNRTG 2 cut(s) 38, 44
SalI GTCGAC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 458, 549
SatI GCNGC 2 cut(s) 207, 484
Sau3AI GATC 1 cut(s) 615
SchI GAGTC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 417
SfcI CTRYAG 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 38, 44
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 2 cut(s) 504, 519
SspMI CTAG 2 cut(s) 281, 380
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 632
TaqI TCGA 3 cut(s) 114, 170, 341
TasI AATT 2 cut(s) 504, 519
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 2 cut(s) 192, 499
Tru1I TTAA 2 cut(s) 458, 549
Tru9I TTAA 2 cut(s) 458, 549
TscAI CASTG 1 cut(s) 637
TseI GCWGC 2 cut(s) 206, 483
TspDTI ATGAA 2 cut(s) 81, 184
TspRI CASTG 1 cut(s) 637
Vha464I CTTAAG 1 cut(s) 548
XceI RCATGY 2 cut(s) 61, 279
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 2 cut(s) 281, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.