Rh4CG435800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000475
Physical Location & Seq
Reverse (-)
67403728 .. 67403970
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG435800.1

Sequence Viewer

Length: 243 bp
ATGGGTCTCAGAGATCTTCTGAAAAGTTCCATATCCAATTCACGGTGGCGCGACGGTGTTTCCACATTCATTGCTATGTCCATGTTGTACAATATTTGTTTACCTTACGTGTCCTATTGTATTCATGTACAACAGCTGCATTTATCAGGTTTTAGAGACAGTTTAATCTTGAAGTCTGTGACATTTTCTATATGGGTGGAGTACAATGCCTGGTGTAAGCTAAGTGTTGCTGTGTCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.15

Weight (kDa)

8.96

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AfaI GTAC 3 cut(s) 89, 129, 203
AfiI CCNNNNNNNGG 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 136, 220
AluI AGCT 2 cut(s) 136, 220
Alw26I GTCTC 2 cut(s) 11, 150
ApeKI GCWGC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 11, 150
BglII AGATCT 1 cut(s) 13
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 2 cut(s) 11, 150
Bso31I GGTCTC 1 cut(s) 11
Bsp1407I TGTACA 2 cut(s) 87, 127
Bsp143I GATC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 69
BsrGI TGTACA 2 cut(s) 87, 127
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 3 cut(s) 45, 56, 161
BstAUI TGTACA 2 cut(s) 87, 127
BstBAI YACGTR 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 8, 221
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 2 cut(s) 11, 150
BstMBI GATC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
CfoI GCGC 1 cut(s) 51
Csp6I GTAC 3 cut(s) 88, 128, 202
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 2 cut(s) 82, 125
CviJI RGCY 2 cut(s) 136, 220
CviKI_1 RGCY 2 cut(s) 136, 220
CviQI GTAC 3 cut(s) 88, 128, 202
DdeI CTNAG 2 cut(s) 8, 221
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 209
FaeI CATG 2 cut(s) 85, 128
FaiI YATR 6 cut(s) 32, 77, 83, 126, 191, 193
FatI CATG 2 cut(s) 81, 124
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 85, 128
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 11, 21
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 45, 56, 161
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 8, 221
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 85, 128
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 132, 196, 223
Lsp1109I GCAGC 1 cut(s) 123
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 13
MluCI AATT 1 cut(s) 37
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 51
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 85, 128
NmuCI GTSAC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 3 cut(s) 89, 129, 203
RsaNI GTAC 3 cut(s) 88, 128, 202
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 211
SetI ASST 5 cut(s) 106, 111, 138, 151, 222
SgeI CNNG 9 cut(s) 54, 62, 94, 121, 137, 159, 181, 222, 223
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 37
SspI AATATT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 3 cut(s) 45, 56, 161
TaiI ACGT 1 cut(s) 111
TasI AATT 1 cut(s) 37
TatI WGTACW 3 cut(s) 87, 127, 201
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 58, 113
TspGWI ACGGA 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.