Rroxscaffold_5G00384690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000475
Physical Location & Seq
Reverse (-)
63935397 .. 63936140
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384690.1

Sequence Viewer

Length: 744 bp
ATGGAGAAGAACTCGAGAGCGGAGAAGAAGTCTAGGTTTCTAGGCATCTTTGGTATCATCAGAGCAGCCATAGAAATCCCTTTCATCAATCCCAGTTTCATTGCCTTCGCATTTATCACATCCCTTCCTCTATTTTGCATAATGATGTTACCGAAATTGCCATTCGAGCCTACTATAATCAGGGAGGCATTAGTTAAGCTAGAACAGCTTAATTCCCACTCCAACAAACTCATATCTGCTACCTCATGGCTTCTAAATGGCACCGTTAGAGTTGGCACGGTTCAACTTTCCAAACTAATCACCTTCCTGGCCACGGTCACTGTTATTCAGTCTGCTTCAACAAAATATAAGGGCGGAGCTGGGAGGTCAGTGGGTCTTCGAGATCTTTTACGAAACAATTTCAGAAATAGGTGGGATAACTCTATGTTGGCATACTTAGTCATGTCCTGGTTCTCAAAGGTGACTTTGGACGCTGTTCTCTTATATGGTACTGCAGGTCCGTTGCGTTCATTAAGAAATGAGTGGGCGCCGCCTCTACATTTCTTCACTCAGGTTGGGGTCTCTTTCGGGCACCACGAGTACAGGGCGTGGTGGCAAGCGGCTCTTGTTGTTTCTGTTTTGGAGGAAGACAAGTTACTAATTGATGCCTTTTTGACCTCCTCAAAGTTGAGAAAAGGAAACAGATTAACGGGGTTTATTTTGATGCTTCTCTATTTGGTTGGTGTAGCTTGCCGAACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.77

Weight (kDa)

10.18

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 485
AccB1I GGYRCC 3 cut(s) 260, 526, 570
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 4 cut(s) 20, 354, 530, 599
AcoI YGGCCR 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 2 cut(s) 490, 581
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 2 cut(s) 284, 339
AjnI CCWGG 2 cut(s) 306, 446
AluBI AGCT 4 cut(s) 199, 208, 359, 728
AluI AGCT 4 cut(s) 199, 208, 359, 728
Alw26I GTCTC 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 292, 472
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 573
BalI TGGCCA 1 cut(s) 311
BanI GGYRCC 3 cut(s) 260, 526, 570
BarI GAAGNNNNNNTAC 2 cut(s) 618, 650
BauI CACGAG 1 cut(s) 575
BbsI GAAGAC 2 cut(s) 368, 633
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 2 cut(s) 308, 448
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 3 cut(s) 33, 41, 200
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 485
BglII AGATCT 1 cut(s) 382
BisI GCNGC 3 cut(s) 66, 530, 600
BlsI GCNGC 3 cut(s) 67, 531, 601
Bme1390I CCNGG 2 cut(s) 308, 448
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 3 cut(s) 262, 528, 572
BmrFI CCNGG 2 cut(s) 308, 448
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 3 cut(s) 54, 634, 693
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 2 cut(s) 368, 633
BplI GAGNNNNNCTC 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 308, 448
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 649
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 3 cut(s) 260, 526, 570
BsiHKCI CYCGRG 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 565
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 4 cut(s) 20, 354, 530, 599
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 262, 528, 572
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 485
BspT107I GGYRCC 3 cut(s) 260, 526, 570
BspTNI GGTCTC 1 cut(s) 565
BsrBI CCGCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 382
BssNI GRCGYC 1 cut(s) 527
BssSI CACGAG 1 cut(s) 575
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 2 cut(s) 308, 448
Bst4CI ACNGT 4 cut(s) 265, 280, 316, 322
BstACI GRCGYC 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 597, 730
BstDEI CTNAG 2 cut(s) 436, 549
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 166, 205
BstNI CCWGG 2 cut(s) 308, 448
BstSCI CCNGG 2 cut(s) 306, 446
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 368, 633
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 318, 375
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 2 cut(s) 597, 730
CfoI GCGC 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 497
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 489, 580
CviAII CATG 2 cut(s) 246, 442
CviJI RGCY 9 cut(s) 68, 169, 199, 208, 250, 311, 359, 602, 728
CviKI_1 RGCY 9 cut(s) 68, 169, 199, 208, 250, 311, 359, 602, 728
CviQI GTAC 2 cut(s) 489, 580
DdeI CTNAG 2 cut(s) 436, 549
DinI GGCGCC 1 cut(s) 528
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 309
EciI GGCGGA 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 306, 446
EgeI GGCGCC 1 cut(s) 528
EheI GGCGCC 1 cut(s) 528
FaeI CATG 2 cut(s) 249, 445
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 2 cut(s) 245, 441
Fnu4HI GCNGC 3 cut(s) 66, 530, 600
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 66, 530, 600
FspBI CTAG 3 cut(s) 33, 41, 200
GlaI GCGC 1 cut(s) 528
GluI GCNGC 3 cut(s) 66, 530, 600
GsaI CCCAGC 1 cut(s) 363
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 1 cut(s) 311
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 529
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 2 cut(s) 249, 445
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HphI GGTGA 2 cut(s) 292, 472
Hpy188I TCNGA 2 cut(s) 62, 404
Hpy188III TCNNGA 3 cut(s) 15, 380, 741
HpyAV CCTTC 3 cut(s) 115, 134, 313
HpyCH4III ACNGT 4 cut(s) 265, 280, 316, 322
HpyCH4V TGCA 2 cut(s) 138, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 205
HpyF3I CTNAG 2 cut(s) 436, 549
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 2 cut(s) 249, 445
HspAI GCGC 1 cut(s) 527
KasI GGCGCC 1 cut(s) 526
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 3 cut(s) 54, 634, 693
MaeI CTAG 3 cut(s) 33, 41, 200
MaeIII GTNAC 4 cut(s) 147, 316, 460, 633
MalI GATC 1 cut(s) 384
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 382
MboII GAAGA 5 cut(s) 19, 37, 368, 535, 638
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 573
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 4 cut(s) 155, 211, 397, 639
MluNI TGGCCA 1 cut(s) 311
Mly113I GGCGCC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 8 cut(s) 138, 178, 253, 357, 543, 616, 667, 670
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
MseI TTAA 4 cut(s) 195, 210, 512, 686
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 308, 448
MvaI CCWGG 2 cut(s) 308, 448
MwoI GCNNNNNNNGC 2 cut(s) 166, 205
NarI GGCGCC 1 cut(s) 527
NdeII GATC 1 cut(s) 382
NlaIII CATG 2 cut(s) 249, 445
NlaIV GGNNCC 3 cut(s) 262, 528, 572
NmuCI GTSAC 2 cut(s) 316, 460
PaeR7I CTCGAG 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PkrI GCNGC 3 cut(s) 67, 531, 601
PluTI GGCGCC 1 cut(s) 530
Psp6I CCWGG 2 cut(s) 306, 446
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 306, 446
PspN4I GGNNCC 3 cut(s) 262, 528, 572
PspPI GGNCC 1 cut(s) 497
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 490, 581
RsaNI GTAC 2 cut(s) 489, 580
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 4 cut(s) 195, 210, 512, 686
SatI GCNGC 3 cut(s) 66, 530, 600
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 1 cut(s) 497
ScrFI CCNGG 2 cut(s) 308, 448
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 3 cut(s) 54, 634, 693
SfcI CTRYAG 1 cut(s) 492
SfoI GGCGCC 1 cut(s) 528
Sfr274I CTCGAG 1 cut(s) 13
SinI GGWCC 1 cut(s) 497
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 4 cut(s) 155, 211, 397, 639
SsiI CCGC 4 cut(s) 20, 354, 530, 599
SspDI GGCGCC 1 cut(s) 526
SspMI CTAG 3 cut(s) 33, 41, 200
StyD4I CCNGG 2 cut(s) 306, 446
TaaI ACNGT 4 cut(s) 265, 280, 316, 322
TaqI TCGA 3 cut(s) 14, 165, 379
TasI AATT 4 cut(s) 155, 211, 397, 639
TatI WGTACW 1 cut(s) 579
TauI GCSGC 2 cut(s) 532, 602
Tru1I TTAA 4 cut(s) 195, 210, 512, 686
Tru9I TTAA 4 cut(s) 195, 210, 512, 686
TscAI CASTG 2 cut(s) 325, 375
TseFI GTSAC 2 cut(s) 316, 460
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 2 cut(s) 316, 460
TspDTI ATGAA 3 cut(s) 73, 88, 498
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 2 cut(s) 325, 375
VpaK11BI GGWCC 1 cut(s) 497
XhoI CTCGAG 1 cut(s) 13
XspI CTAG 3 cut(s) 33, 41, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.