Rh3BG236700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000475
Physical Location & Seq
Forward (+)
22129724 .. 22131945
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG236700.1

Sequence Viewer

Length: 975 bp
ATGGAGAGCAACATAATGTTGAAGAACCAGAATCTGGATGCCTTTGATATTCTTAGAAAAGCTTTTGTTATCTCTTCCAGAAACATTAACTTCTTTCTCTTCACTATTTTCGCTTCCCTTCCTCTCTTCTGTTTCTTGGTTTACTATCAACCTTTTCTACAAATATTCCAGGATCAAGTATCAGAAATTCTAAAACAACCGGCCTTTGTTTATTATTTTGAGGACTACATGTTTAATTGGTCATTACCATTTGATGCAACCCCGGAATGGAACAAAGGGTTTCCTGGTGAGTTGATTCAACAAGCACTTCTCTATCTGGTGCCTTTCCATCTCCTAGAGCTCATCACCATGCTTGCAATTGCTAATTTGGCCTCGAAGATATATAAAGAAGAGAGACCAATGAGTCTGAAGGAGATGGTGCGTACACAACCTTTCGACAAATCTGGACTGAAAGCCTTTTTCATCACATCTGTCTATGTTCTCGTCTTGTCCACCTGTAGTGAGCTACTCGGATTTGTATGGTCAGCTGCAAGCTACTCTTTTGCATTCAGGTACTTTAACCATGATATACTCTTAGCTTTATGGTGTTGTATAGCAAGTGTAGCACTGCTAACAATGTATTTGGCATGGAATGTGATATGGAATATCAGTATTGTGATTTCGATATTGGAGGGGATACATGGAACCAGGGCATTTGGTCTAGTAACGTATCTAAGCACTGGCAACGAGTGGGGAGGGTTTCTTTTGATGTTGATTTTCTTTGCTTGGGAAGTAACTTTAAGGTTGCCATGTCTCTATTTTGGCTGCAAAGGAAGGGGGAATGAAATGTTTGTTGCACAGAGTAGCTTGTTGTGCTTAGGAAATGTGTTCAAGTTGGTCGTCTTTGTTATATATTTCCACGATTGCAAGAACCGGGTTTTAGAAAAGAGGTTGATGATCAAGGCTAAAAGAGCTGGTTATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

37.48

Weight (kDa)

8.3

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 34
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 424, 554
AfiI CCNNNNNNNGG 2 cut(s) 34, 267
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 3 cut(s) 22, 299, 871
AjnI CCWGG 3 cut(s) 168, 283, 686
AluBI AGCT 9 cut(s) 62, 340, 505, 527, 534, 578, 846, 953, 966
AluI AGCT 9 cut(s) 62, 340, 505, 527, 534, 578, 846, 953, 966
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 2 cut(s) 388, 797
AlwI GGATC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 2 cut(s) 201, 369
ApeKI GCWGC 2 cut(s) 527, 804
ApoI RAATTY 1 cut(s) 186
AsuC2I CCSGG 2 cut(s) 263, 914
AsuHPI GGTGA 2 cut(s) 299, 337
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 514, 791
BccI CCATC 2 cut(s) 336, 409
BciT130I CCWGG 3 cut(s) 170, 285, 688
BciVI GTATCC 1 cut(s) 669
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 2 cut(s) 263, 914
BcoDI GTCTC 2 cut(s) 388, 797
BfaI CTAG 2 cut(s) 335, 701
BfmI CTRYAG 1 cut(s) 496
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 2 cut(s) 528, 805
BlsI GCNGC 2 cut(s) 529, 806
Bme1390I CCNGG 5 cut(s) 170, 263, 285, 688, 914
BmiI GGNNCC 2 cut(s) 321, 685
BmrFI CCNGG 5 cut(s) 170, 263, 285, 688, 914
BmsI GCATC 2 cut(s) 28, 244
Bpu10I CCTNAGC 1 cut(s) 856
BpuMI CCSGG 2 cut(s) 263, 914
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 261, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 267
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 724
BseBI CCWGG 3 cut(s) 170, 285, 688
BseDI CCNNGG 2 cut(s) 261, 687
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 34, 267
BseNI ACTGG 1 cut(s) 724
BseXI GCAGC 2 cut(s) 514, 791
BshFI GGCC 2 cut(s) 203, 371
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 3 cut(s) 200, 263, 913
BslI CCNNNNNNNGG 2 cut(s) 34, 267
BsmAI GTCTC 2 cut(s) 388, 797
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 2 cut(s) 203, 371
Bso31I GGTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 172, 936
BspANI GGCC 2 cut(s) 203, 371
BspLI GGNNCC 2 cut(s) 321, 685
BspPI GGATC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 724
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 261, 687
BssMI GATC 2 cut(s) 172, 936
Bst2UI CCWGG 3 cut(s) 170, 285, 688
Bst6I CTCTTC 4 cut(s) 79, 104, 131, 384
BstC8I GCNNGC 2 cut(s) 354, 532
BstDEI CTNAG 4 cut(s) 53, 574, 713, 856
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 2 cut(s) 175, 939
BstMAI GTCTC 2 cut(s) 388, 797
BstMBI GATC 2 cut(s) 172, 936
BstMWI GCNNNNNNNGC 4 cut(s) 368, 602, 852, 950
BstNI CCWGG 3 cut(s) 170, 285, 688
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 5 cut(s) 168, 261, 283, 686, 912
BstSFI CTRYAG 1 cut(s) 496
BstV1I GCAGC 2 cut(s) 514, 791
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 203, 371
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 2 cut(s) 605, 717
Cac8I GCNNGC 2 cut(s) 354, 532
CaiI CAGNNNCTG 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 199
Csp6I GTAC 2 cut(s) 423, 553
CviAII CATG 6 cut(s) 229, 349, 563, 627, 680, 789
CviQI GTAC 2 cut(s) 423, 553
DdeI CTNAG 4 cut(s) 53, 574, 713, 856
DpnI GATC 2 cut(s) 174, 938
DpnII GATC 2 cut(s) 172, 936
DrdI GACNNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 402
Eam1104I CTCTTC 4 cut(s) 79, 104, 131, 384
EarI CTCTTC 4 cut(s) 79, 104, 131, 384
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 3 cut(s) 168, 283, 686
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 6 cut(s) 232, 352, 566, 630, 683, 792
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FatI CATG 6 cut(s) 228, 348, 562, 626, 679, 788
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 2 cut(s) 528, 805
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 528, 805
FspBI CTAG 2 cut(s) 335, 701
GluI GCNGC 2 cut(s) 528, 805
HaeIII GGCC 2 cut(s) 203, 371
HapII CCGG 3 cut(s) 200, 263, 913
Hin1II CATG 6 cut(s) 232, 352, 566, 630, 683, 792
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 3 cut(s) 31, 295, 403
HpaII CCGG 3 cut(s) 200, 263, 913
HphI GGTGA 2 cut(s) 299, 337
Hpy166II GTNNAC 3 cut(s) 142, 425, 492
Hpy188I TCNGA 4 cut(s) 184, 408, 512, 963
Hpy188III TCNNGA 3 cut(s) 35, 78, 444
Hpy8I GTNNAC 3 cut(s) 142, 425, 492
HpyAV CCTTC 3 cut(s) 128, 403, 807
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 7 cut(s) 257, 356, 530, 545, 807, 836, 906
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 602, 852, 950
HpyF3I CTNAG 4 cut(s) 53, 574, 713, 856
HpySE526I ACGT 1 cut(s) 707
Hsp92II CATG 6 cut(s) 232, 352, 566, 630, 683, 792
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 2 cut(s) 172, 936
Lsp1109I GCAGC 2 cut(s) 514, 791
LweI GCATC 2 cut(s) 28, 244
MaeI CTAG 2 cut(s) 335, 701
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 2 cut(s) 703, 772
MalI GATC 2 cut(s) 174, 938
MboI GATC 2 cut(s) 172, 936
MboII GAAGA 6 cut(s) 34, 66, 91, 118, 388, 401
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 4 cut(s) 186, 235, 357, 364
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 6 cut(s) 132, 214, 382, 664, 728, 921
MseI TTAA 4 cut(s) 87, 234, 558, 779
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 3 cut(s) 200, 263, 913
MspR9I CCNGG 5 cut(s) 170, 263, 285, 688, 914
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 3 cut(s) 170, 285, 688
MwoI GCNNNNNNNGC 4 cut(s) 368, 602, 852, 950
NciI CCSGG 2 cut(s) 263, 914
NdeII GATC 2 cut(s) 172, 936
NlaIII CATG 6 cut(s) 232, 352, 566, 630, 683, 792
NlaIV GGNNCC 2 cut(s) 321, 685
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 31, 295
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 2 cut(s) 529, 806
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PscI ACATGT 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 3 cut(s) 168, 283, 686
PspGI CCWGG 3 cut(s) 168, 283, 686
PspN4I GGNNCC 2 cut(s) 321, 685
PstNI CAGNNNCTG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 424, 554
RsaNI GTAC 2 cut(s) 423, 553
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 4 cut(s) 87, 234, 558, 779
SatI GCNGC 2 cut(s) 528, 805
Sau3AI GATC 2 cut(s) 172, 936
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 5 cut(s) 170, 263, 285, 688, 914
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 2 cut(s) 28, 244
SfcI CTRYAG 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 4 cut(s) 186, 235, 357, 364
SspI AATATT 1 cut(s) 165
SspMI CTAG 2 cut(s) 335, 701
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 5 cut(s) 168, 261, 283, 686, 912
TaiI ACGT 1 cut(s) 710
TaqI TCGA 3 cut(s) 374, 435, 662
TasI AATT 4 cut(s) 186, 235, 357, 364
TfiI GAWTC 2 cut(s) 31, 295
Tru1I TTAA 4 cut(s) 87, 234, 558, 779
Tru9I TTAA 4 cut(s) 87, 234, 558, 779
TscAI CASTG 2 cut(s) 612, 724
TseI GCWGC 2 cut(s) 527, 804
TspDTI ATGAA 2 cut(s) 451, 837
TspRI CASTG 2 cut(s) 612, 724
Van91I CCANNNNNTGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 232
XspI CTAG 2 cut(s) 335, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.