Rmu_sc0002177.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002177.1
OG0000475
Physical Location & Seq
Reverse (-)
38389 .. 38751
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002177.1_g000009.1.cds

Sequence Viewer

Length: 363 bp
atggcactgctagcaaattacttagagtggggtgctatatggaacatgagcattgtaatttcaatactggagaacagacatggggctaatgcactcatgttctcagcccatctgagcagaggtagagaacggcggcaaggacttgttttgatgcttattttcggtctttggggactcggtttaaggctggcatgcctcttctttaaatgctatgaaggaaaaggcggaattgttgctcagatgggccttttctgtaccggcaatgtggtgcagtgggttgcgtacatgatttattcctacaattgcaaaatcctgatctcagagaagagagttgatgtggaaattggactagttgagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.56

Weight (kDa)

9.02

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 133, 225
AfaI GTAC 2 cut(s) 256, 284
AgsI TTSAA 1 cut(s) 63
AhlI ACTAGT 1 cut(s) 349
AoxI GGCC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 244
AsuNHI GCTAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 117, 235
BceAI ACGGC 1 cut(s) 146
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 2 cut(s) 11, 350
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 244
BmsI GCATC 1 cut(s) 141
BmtI GCTAGC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 4 cut(s) 104, 117, 251, 333
BseNI ACTGG 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 2 cut(s) 133, 225
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 4 cut(s) 105, 116, 250, 332
BspOI GCTAGC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 1 cut(s) 315
Bst6I CTCTTC 2 cut(s) 203, 320
BstC8I GCNNGC 3 cut(s) 12, 189, 193
BstDEI CTNAG 5 cut(s) 22, 103, 113, 237, 319
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 246
BtsI GCAGTG 2 cut(s) 5, 278
BtsIMutI CAGTG 2 cut(s) 5, 278
Cac8I GCNNGC 3 cut(s) 12, 189, 193
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 255, 283
CviAII CATG 5 cut(s) 46, 80, 97, 192, 286
CviJI RGCY 4 cut(s) 86, 107, 187, 246
CviKI_1 RGCY 4 cut(s) 86, 107, 187, 246
CviQI GTAC 2 cut(s) 255, 283
DdeI CTNAG 5 cut(s) 22, 103, 113, 237, 319
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 203, 320
EarI CTCTTC 2 cut(s) 203, 320
EciI GGCGGA 1 cut(s) 240
FaeI CATG 5 cut(s) 49, 83, 100, 195, 289
FaiI YATR 8 cut(s) 38, 40, 47, 81, 98, 193, 213, 287
FaqI GGGAC 1 cut(s) 186
FatI CATG 5 cut(s) 45, 79, 96, 191, 285
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 11, 350
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 258
Hin1II CATG 5 cut(s) 49, 83, 100, 195, 289
HinfI GANTC 1 cut(s) 174
HpaII CCGG 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 114, 240, 322
Hpy188III TCNNGA 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 92, 271, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 5 cut(s) 22, 103, 113, 237, 319
Hsp92II CATG 5 cut(s) 49, 83, 100, 195, 289
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 4 cut(s) 53, 173, 271, 326
LweI GCATC 1 cut(s) 141
MaeI CTAG 2 cut(s) 11, 350
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 190, 337
MfeI CAATTG 1 cut(s) 301
MluCI AATT 5 cut(s) 16, 57, 228, 301, 342
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 2 cut(s) 113, 206
MseI TTAA 2 cut(s) 182, 204
MspI CCGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 315
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 5 cut(s) 49, 83, 100, 195, 289
NspI RCATGY 1 cut(s) 195
PaeI GCATGC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 244
RsaI GTAC 2 cut(s) 256, 284
RsaNI GTAC 2 cut(s) 255, 283
SaqAI TTAA 2 cut(s) 182, 204
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 168
SetI ASST 1 cut(s) 124
SfaNI GCATC 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 349
SphI GCATGC 1 cut(s) 195
Sse9I AATT 5 cut(s) 16, 57, 228, 301, 342
SsiI CCGC 2 cut(s) 133, 225
SspMI CTAG 2 cut(s) 11, 350
TaqII GACCGA 1 cut(s) 152
TasI AATT 5 cut(s) 16, 57, 228, 301, 342
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 182, 204
Tru9I TTAA 2 cut(s) 182, 204
TscAI CASTG 2 cut(s) 12, 278
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 2 cut(s) 12, 278
XceI RCATGY 1 cut(s) 195
XspI CTAG 2 cut(s) 11, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.