RLG00000005859

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000475
Physical Location & Seq
Forward (+)
2393976 .. 2394947
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005859

Sequence Viewer

Length: 597 bp
ATGTCAGATGTTCTTCGACTACCTCATCAGTACATCCACTCTGAATGGCTCATACCAATTGGTATCATCAAAAAATTGAACCAAGACTTTCCTGATGGGTTGATTCAACTAGTCCTTCTCTATCTGGCGCCTCTCCATCTCCTAGAGCTCGGCACTGTGCTAGTGACTGTCGATTTGGCATCACGGATATACAAAGAAGAGAAACTTTTGCGTCTCAAGGAAATGGTGCATAAACCCTTCAACAAAACAAGATTGAAAGGCACTTTTATTACATCTGTCTACAGGCTTGTCCTATCGACTTGTACTCTATTCGTATCAACATGGTTTACAACAACCTATTATGTTGCATCCAGACTGCCATGCTTATACATTATCTGCAAAGAAAGAGGGAATGGAATTCTTGCACAGGTTTGCTTGTTCTGCTTTGGGAATGTGGTGAAGTGGGTCGAGTTCATGATCTACTTTTACGATTGCAAGAACCGGATTGCCGACAAGAAGTTGATGATGAAGGCTAAGAGTGTCGTCCCTGGTTTTACATTCTTATGGATGTCTTGCTCGTCACCTTGTCCTGTATTCTTTGGACATTTCAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.96

Weight (kDa)

9.27

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 2 cut(s) 32, 304
AgsI TTSAA 5 cut(s) 79, 107, 241, 256, 589
AhlI ACTAGT 1 cut(s) 109
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 396
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 448, 552
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 89, 144
BciT130I CCWGG 1 cut(s) 528
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 3 cut(s) 110, 143, 161
BfmI CTRYAG 1 cut(s) 280
BfoI RGCGCY 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 528
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 188, 356
BpuEI CTTGAG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 1 cut(s) 480
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 3 cut(s) 33, 347, 552
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 481
BslFI GGGAC 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 456
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 1 cut(s) 456
BssNI GRCGYC 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 157, 169
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 33, 347, 552
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 1 cut(s) 280
BtsCI GGATG 3 cut(s) 33, 347, 552
BtsIMutI CAGTG 1 cut(s) 153
CciI TCATGA 1 cut(s) 453
CfoI GCGC 1 cut(s) 130
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 31, 303
CviAII CATG 3 cut(s) 321, 360, 454
CviJI RGCY 4 cut(s) 49, 148, 286, 512
CviKI_1 RGCY 4 cut(s) 49, 148, 286, 512
CviQI GTAC 2 cut(s) 31, 303
DdeI CTNAG 1 cut(s) 513
DinI GGCGCC 1 cut(s) 129
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 3 cut(s) 324, 363, 457
FaiI YATR 9 cut(s) 53, 190, 231, 322, 342, 361, 367, 455, 544
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 509
FatI CATG 3 cut(s) 320, 359, 453
FblI GTMKAC 1 cut(s) 279
FokI GGATG 3 cut(s) 20, 334, 559
FriOI GRGCYC 1 cut(s) 150
FspBI CTAG 3 cut(s) 110, 143, 161
GlaI GCGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 131
HapII CCGG 1 cut(s) 481
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 324, 363, 457
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 481
HphI GGTGA 2 cut(s) 448, 552
Hpy166II GTNNAC 2 cut(s) 280, 327
Hpy188I TCNGA 2 cut(s) 7, 43
Hpy188III TCNNGA 3 cut(s) 92, 351, 454
Hpy8I GTNNAC 2 cut(s) 280, 327
HpyAV CCTTC 3 cut(s) 125, 247, 502
HpyCH4III ACNGT 2 cut(s) 157, 169
HpyCH4V TGCA 5 cut(s) 229, 347, 378, 404, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 1 cut(s) 513
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 324, 363, 457
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 456
LpnPI CCDG 9 cut(s) 105, 110, 268, 364, 392, 494, 513, 540, 582
LweI GCATC 2 cut(s) 188, 356
MaeI CTAG 3 cut(s) 110, 143, 161
MaeIII GTNAC 2 cut(s) 163, 558
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 2 cut(s) 5, 209
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 57, 74, 396
Mly113I GGCGCC 1 cut(s) 128
MnlI CCTC 3 cut(s) 33, 141, 380
MseI TTAA 1 cut(s) 595
MslI CAYNNNNRTG 1 cut(s) 541
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 528
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 420
NarI GGCGCC 1 cut(s) 128
NdeII GATC 1 cut(s) 456
NlaIII CATG 3 cut(s) 324, 363, 457
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 163, 558
PagI TCATGA 1 cut(s) 453
PfeI GAWTC 1 cut(s) 103
PluTI GGCGCC 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 129
RsaI GTAC 2 cut(s) 32, 304
RsaNI GTAC 2 cut(s) 31, 303
RseI CAYNNNNRTG 1 cut(s) 541
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 595
Sau3AI GATC 1 cut(s) 456
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 25, 150, 338, 411, 565
SfaNI GCATC 2 cut(s) 188, 356
SfcI CTRYAG 1 cut(s) 280
SfoI GGCGCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 3 cut(s) 57, 74, 396
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 3 cut(s) 110, 143, 161
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 157, 169
TaqI TCGA 4 cut(s) 16, 171, 296, 447
TasI AATT 3 cut(s) 57, 74, 396
TatI WGTACW 2 cut(s) 30, 302
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 163, 558
Tsp45I GTSAC 2 cut(s) 163, 558
TspDTI ATGAA 2 cut(s) 442, 521
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 160
XapI RAATTY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 3 cut(s) 110, 143, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.