RchiOBHm_Chr3g0476381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000475
Physical Location & Seq
Forward (+)
22291561 .. 22292697
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44181

Sequence Viewer

Length: 1137 bp
ATGCGTGGTTTGGATGCTTCTGTGACCACACTCTCTTGGGGCCTTGGGGCCCTAGACCCTAGTGTTGATTTTTCGTATCTCAAGTCCACCCCATCAAGGAAGACTTGGAGTCCCTTAAGATGTGTGTTTAGATTGAGCTTAATTGGAAGTGAAAGCACAGAGATGGAGAGCAACATAATGTTGAAGAACCAGAATCTGGATGCCTTTGATATTCTTAGAAAAGCTTTTGTTATCTCTTCCAGAAACATTAACTTCTTTCTCTTCACTATTTTCGCTTCCCTTCCTCTCTTCTGTTTCTTGGTTTACTATCAACCTTTTCTACAAATATTCCAGGATCAAGTATCAGAAATTCTAAAACAACCGGCCTTTGTTTATTATTTTGAGGACTACATGTTTAATTGGTCATTACCATTTGATGCAACCCCGGAATGGAACAAAGGGTTTCCTGGTGAGTTGATTCAACAAGCACTTCTCTATCTGGTGCCTTTCCATCTCCTAGAGCTCATCACCATGCTTGCAATTGCTAATTTGGCCTCGAAGATATATAAAGAAGAGAGACCAATGAGTCTGAAGGAGATGGTGCGTACACAACCTTTCGACAAATCTGGACTGAAAGCCTTTTTCATCACATCTGTCTATGTTCTCGTCTTGTCCACCTGTAGTGAGCTACTCGGATTTGTATGGTCAGCTGCAAGCTACTCTTTTGCATTCAGGTACTTTAACCATGATATACTCTTAGCTTTATGGTGTTGTATAGCAAGTGTAGCACTGCTAACAATGTATTTGGCATGGAATGTGATATGGAATATCAGTATTGTGATTTCGATATTGGAGGGGATACATGGAACCAGGGCATTTGGTCTAGTAACGTATCTAAGCACTGGCAACGAGTGGGGAGGGTTTCTTTTGATGTTGATTTTCTTTGCTTGGGAAGTAACTTTAAGGTTGCCATGTCTCTATTTTGGCTGCAAAGGAAGGGGGAATGAAATGTTTGTTGCACAGAGTAGCTTGTTGTGCTTAGGAAATGTGTTCAAGTTGGTCGTCTTTGTTATATATTTCCACGATTGCAAGAACCGGGTTTTAGAAAAGAGGTTGATGATCAAGGCTAAAAGAGCTGGTTATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.38

Weight (kDa)

8.44

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 196
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 2 cut(s) 586, 716
AfiI CCNNNNNNNGG 3 cut(s) 96, 196, 429
AflII CTTAAG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 184, 461, 1033
AhdI GACNNNNNGTC 1 cut(s) 108
AjnI CCWGG 3 cut(s) 330, 445, 848
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 550, 959
AlwI GGATC 1 cut(s) 342
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 4 cut(s) 40, 48, 363, 531
ApaI GGGCCC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 689, 966
ApoI RAATTY 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 40, 48, 49
AsuC2I CCSGG 2 cut(s) 425, 1076
AsuHPI GGTGA 2 cut(s) 461, 499
BaeGI GKGCMC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 2 cut(s) 52, 504
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 676, 953
BccI CCATC 4 cut(s) 100, 157, 498, 571
BciT130I CCWGG 3 cut(s) 332, 447, 850
BciVI GTATCC 1 cut(s) 831
BclI TGATCA 1 cut(s) 1098
BcnI CCSGG 2 cut(s) 425, 1076
BcoDI GTCTC 2 cut(s) 550, 959
BfaI CTAG 4 cut(s) 53, 60, 497, 863
BfmI CTRYAG 1 cut(s) 658
BfrI CTTAAG 1 cut(s) 115
BfuI GTATCC 1 cut(s) 831
BisI GCNGC 2 cut(s) 690, 967
BlsI GCNGC 2 cut(s) 691, 968
Bme1390I CCNGG 5 cut(s) 332, 425, 447, 850, 1076
BmeRI GACNNNNNGTC 1 cut(s) 108
BmgT120I GGNCC 3 cut(s) 40, 48, 49
BmiI GGNNCC 5 cut(s) 41, 49, 50, 483, 847
BmrFI CCNGG 5 cut(s) 332, 425, 447, 850, 1076
BmsI GCATC 3 cut(s) 4, 190, 406
BpiI GAAGAC 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 1018
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 425, 1076
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 3 cut(s) 43, 423, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 196, 429
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 886
BseBI CCWGG 3 cut(s) 332, 447, 850
BseDI CCNNGG 3 cut(s) 43, 423, 849
BseGI GGATG 2 cut(s) 19, 205
BseLI CCNNNNNNNGG 3 cut(s) 96, 196, 429
BseNI ACTGG 1 cut(s) 886
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 2 cut(s) 676, 953
BshFI GGCC 4 cut(s) 42, 50, 365, 533
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 3 cut(s) 362, 425, 1075
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 96, 196, 429
BsmAI GTCTC 2 cut(s) 550, 959
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 4 cut(s) 42, 50, 365, 533
Bso31I GGTCTC 1 cut(s) 550
Bsp120I GGGCCC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 52, 504
Bsp143I GATC 2 cut(s) 334, 1098
BspANI GGCC 4 cut(s) 42, 50, 365, 533
BspLI GGNNCC 5 cut(s) 41, 49, 50, 483, 847
BspPI GGATC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 1 cut(s) 886
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 43, 423, 849
BssMI GATC 2 cut(s) 334, 1098
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 3 cut(s) 332, 447, 850
Bst6I CTCTTC 4 cut(s) 241, 266, 293, 546
BstAFI CTTAAG 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 516, 694
BstDEI CTNAG 4 cut(s) 215, 736, 875, 1018
BstF5I GGATG 2 cut(s) 19, 205
BstKTI GATC 2 cut(s) 337, 1101
BstMAI GTCTC 2 cut(s) 550, 959
BstMBI GATC 2 cut(s) 334, 1098
BstMWI GCNNNNNNNGC 4 cut(s) 530, 764, 1014, 1112
BstNI CCWGG 3 cut(s) 332, 447, 850
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 5 cut(s) 330, 423, 445, 848, 1074
BstSFI CTRYAG 1 cut(s) 658
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 676, 953
BstV2I GAAGAC 1 cut(s) 107
BsuI GTATCC 1 cut(s) 831
BsuRI GGCC 4 cut(s) 42, 50, 365, 533
BtsCI GGATG 2 cut(s) 19, 205
BtsI GCAGTG 1 cut(s) 767
BtsIMutI CAGTG 2 cut(s) 767, 879
Cac8I GCNNGC 2 cut(s) 516, 694
CaiI CAGNNNCTG 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 40, 48, 49
Csp6I GTAC 2 cut(s) 585, 715
CviAII CATG 6 cut(s) 391, 511, 725, 789, 842, 951
CviQI GTAC 2 cut(s) 585, 715
DdeI CTNAG 4 cut(s) 215, 736, 875, 1018
DpnI GATC 2 cut(s) 336, 1100
DpnII GATC 2 cut(s) 334, 1098
DrdI GACNNNNNNGTC 1 cut(s) 564
DriI GACNNNNNGTC 1 cut(s) 108
DseDI GACNNNNNNGTC 1 cut(s) 564
Eam1104I CTCTTC 4 cut(s) 241, 266, 293, 546
Eam1105I GACNNNNNGTC 1 cut(s) 108
EarI CTCTTC 4 cut(s) 241, 266, 293, 546
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 52, 504
Eco31I GGTCTC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 502
EcoO109I RGGNCCY 3 cut(s) 40, 48, 49
EcoRII CCWGG 3 cut(s) 330, 445, 848
EcoT14I CCWWGG 1 cut(s) 43
EcoT38I GRGCYC 2 cut(s) 52, 504
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 6 cut(s) 394, 514, 728, 792, 845, 954
FalI AAGNNNNNCTT 4 cut(s) 88, 120, 685, 717
FaqI GGGAC 1 cut(s) 96
FatI CATG 6 cut(s) 390, 510, 724, 788, 841, 950
FbaI TGATCA 1 cut(s) 1098
Fnu4HI GCNGC 2 cut(s) 690, 967
FokI GGATG 2 cut(s) 26, 212
FriOI GRGCYC 2 cut(s) 52, 504
Fsp4HI GCNGC 2 cut(s) 690, 967
FspBI CTAG 4 cut(s) 53, 60, 497, 863
GluI GCNGC 2 cut(s) 690, 967
HaeIII GGCC 4 cut(s) 42, 50, 365, 533
HapII CCGG 3 cut(s) 362, 425, 1075
Hin1II CATG 6 cut(s) 394, 514, 728, 792, 845, 954
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 4 cut(s) 109, 193, 457, 565
HpaII CCGG 3 cut(s) 362, 425, 1075
HphI GGTGA 2 cut(s) 461, 499
Hpy166II GTNNAC 4 cut(s) 87, 304, 587, 654
Hpy188I TCNGA 4 cut(s) 346, 570, 674, 1125
Hpy188III TCNNGA 3 cut(s) 197, 240, 606
Hpy8I GTNNAC 4 cut(s) 87, 304, 587, 654
HpyAV CCTTC 3 cut(s) 290, 565, 969
HpyCH4IV ACGT 1 cut(s) 869
HpyCH4V TGCA 7 cut(s) 419, 518, 692, 707, 969, 998, 1068
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 764, 1014, 1112
HpyF3I CTNAG 4 cut(s) 215, 736, 875, 1018
HpySE526I ACGT 1 cut(s) 869
Hsp92II CATG 6 cut(s) 394, 514, 728, 792, 845, 954
Ksp22I TGATCA 1 cut(s) 1098
Kzo9I GATC 2 cut(s) 334, 1098
Lsp1109I GCAGC 2 cut(s) 676, 953
LweI GCATC 3 cut(s) 4, 190, 406
MaeI CTAG 4 cut(s) 53, 60, 497, 863
MaeII ACGT 1 cut(s) 869
MaeIII GTNAC 3 cut(s) 22, 865, 934
MalI GATC 2 cut(s) 336, 1100
MboI GATC 2 cut(s) 334, 1098
MboII GAAGA 7 cut(s) 112, 196, 228, 253, 280, 550, 563
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 52, 504
MluCI AATT 5 cut(s) 141, 348, 397, 519, 526
MlyI GAGTC 2 cut(s) 118, 574
MnlI CCTC 6 cut(s) 294, 376, 544, 826, 890, 1083
MseI TTAA 6 cut(s) 116, 140, 249, 396, 720, 941
MslI CAYNNNNRTG 2 cut(s) 161, 509
MspA1I CMGCKG 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 115
MspI CCGG 3 cut(s) 362, 425, 1075
MspR9I CCNGG 5 cut(s) 332, 425, 447, 850, 1076
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 3 cut(s) 332, 447, 850
MwoI GCNNNNNNNGC 4 cut(s) 530, 764, 1014, 1112
NciI CCSGG 2 cut(s) 425, 1076
NdeII GATC 2 cut(s) 334, 1098
NlaIII CATG 6 cut(s) 394, 514, 728, 792, 845, 954
NlaIV GGNNCC 5 cut(s) 41, 49, 50, 483, 847
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 193, 457
PflMI CCANNNNNTGG 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 330
PkrI GCNGC 2 cut(s) 691, 968
PleI GAGTC 2 cut(s) 117, 573
PpsI GAGTC 2 cut(s) 117, 573
PscI ACATGT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 3 cut(s) 330, 445, 848
PspGI CCWGG 3 cut(s) 330, 445, 848
PspN4I GGNNCC 5 cut(s) 41, 49, 50, 483, 847
PspOMI GGGCCC 1 cut(s) 48
PspPI GGNCC 3 cut(s) 40, 48, 49
PstNI CAGNNNCTG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 2 cut(s) 586, 716
RsaNI GTAC 2 cut(s) 585, 715
RseI CAYNNNNRTG 2 cut(s) 161, 509
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 6 cut(s) 116, 140, 249, 396, 720, 941
SatI GCNGC 2 cut(s) 690, 967
Sau3AI GATC 2 cut(s) 334, 1098
Sau96I GGNCC 3 cut(s) 40, 48, 49
SchI GAGTC 2 cut(s) 118, 574
ScrFI CCNGG 5 cut(s) 332, 425, 447, 850, 1076
SduI GDGCHC 2 cut(s) 52, 504
SfaNI GCATC 3 cut(s) 4, 190, 406
SfcI CTRYAG 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 161, 509
SmlI CTYRAG 2 cut(s) 80, 115
SmoI CTYRAG 2 cut(s) 80, 115
Sse9I AATT 5 cut(s) 141, 348, 397, 519, 526
SspI AATATT 1 cut(s) 327
SspMI CTAG 4 cut(s) 53, 60, 497, 863
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 5 cut(s) 330, 423, 445, 848, 1074
StyI CCWWGG 1 cut(s) 43
TaiI ACGT 1 cut(s) 872
TaqI TCGA 3 cut(s) 536, 597, 824
TasI AATT 5 cut(s) 141, 348, 397, 519, 526
TfiI GAWTC 2 cut(s) 193, 457
Tru1I TTAA 6 cut(s) 116, 140, 249, 396, 720, 941
Tru9I TTAA 6 cut(s) 116, 140, 249, 396, 720, 941
TscAI CASTG 2 cut(s) 774, 886
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 689, 966
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 613, 999
TspRI CASTG 2 cut(s) 774, 886
Van91I CCANNNNNTGG 1 cut(s) 196
Vha464I CTTAAG 1 cut(s) 115
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 394
XspI CTAG 4 cut(s) 53, 60, 497, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.