RchiOBHm_Chr4g0444081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000475
Physical Location & Seq
Reverse (-)
64944313 .. 64945263
951 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41178

Sequence Viewer

Length: 951 bp
ATGGTTATGGAAAGCAACCATATCATCATGTTGAAGCAAAAGCTTGGAGTCTTTGATATACTCAAAGAAGCTCTTTATTTAATCTGCAAGAACCACAGCTTTATTGTACTCACCTTTCTCACCTCTCTACCCTTTTTCTGTTTCTCAATTTACTATGAATTACACCTGCAAACAACCCTGGTTCAAATCTCAGAGATTCTAAACCAAAATTCTGGTTTTTTCAACTACAATTGGCAAACACAGCTGCATACTGCAACAAGTATGGCCCAGATGTTTTCCAACAACTTGATACAACTGGGACTTCTTTATCTGATACCTCTCCATCTCCTAGAGCTTTGCAGTGCTTTTGTGATTGTCGATTTGGCCTCAAAGTTAGGAGGAAAAGGGAAGTCCGGGGAGGTATCTGGTGGTGGCAGTGTTACCAGAATGGTGCGCTTCAGAGGAACTCTTGTCACATCCATCTGGGTACTTTTCTTATCAACTTGTACTGTAGTTGGATCAATATGGTTAGTCTCAGTATACTATGTTTTATTGAGAAACTTTGGGTACTATAATGCATATTGTAGAGTGCTATACAAGGCAGCTTGTATGGCACTGCTAGCAAATTACTTGGAGTGGGGTGCTATATGGAACATGAGCATTGTAATTTCAATACTGGAGAACAGACATGGGGCTAATGCACTCATGTTCTCAGCCTATCTAAGCAGAGGTAGAGAACGGCGGCAAGGACTTGTTTTGATGCTTATTTTCGGTGTTTGGGGACTCGGTTTAAGGCTGGCATGCCTCTTCTTTAAATGCTATGAAGGAAAAGGCGGAATTGTTGCTCAGATGGGCCTTTTCTGTACCGGCAATGTGGTGAAGTGGGTTGCGTACATGATTTATTCCTACAATTGCAAAAGCCTGATCTCAGAGAAGAGAGTTGATGTGGAAATTGGACTAGTTGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

35.75

Weight (kDa)

9.1

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 519
AciI CCGC 2 cut(s) 721, 813
AclWI GGATC 1 cut(s) 505
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 6 cut(s) 108, 468, 487, 548, 844, 872
AgsI TTSAA 4 cut(s) 34, 185, 223, 651
AhlI ACTAGT 1 cut(s) 937
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 6 cut(s) 43, 71, 99, 244, 334, 584
AluI AGCT 6 cut(s) 43, 71, 99, 244, 334, 584
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 1 cut(s) 505
AoxI GGCC 3 cut(s) 264, 363, 832
ApeKI GCWGC 2 cut(s) 244, 581
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 265, 832
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 3 cut(s) 103, 112, 868
AsuNHI GCTAGC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 231, 593
BccI CCATC 3 cut(s) 330, 467, 823
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 517
BcuI ACTAGT 1 cut(s) 937
BfaI CTAG 3 cut(s) 329, 599, 938
BfmI CTRYAG 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 245, 582, 722
BlsI GCNGC 3 cut(s) 246, 583, 723
Bme1390I CCNGG 2 cut(s) 179, 394
BmgT120I GGNCC 2 cut(s) 265, 832
BmrFI CCNGG 2 cut(s) 179, 394
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 729
BmtI GCTAGC 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 677
BpuMI CCSGG 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 177, 393
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 2 cut(s) 300, 660
Bse3DI GCAATG 1 cut(s) 856
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 177, 393
BseGI GGATG 1 cut(s) 455
BseMI GCAATG 1 cut(s) 856
BseMII CTCAG 5 cut(s) 204, 528, 705, 839, 921
BseNI ACTGG 2 cut(s) 300, 660
BseXI GCAGC 2 cut(s) 231, 593
BshFI GGCC 3 cut(s) 266, 365, 834
BsiSI CCGG 2 cut(s) 393, 846
BslFI GGGAC 2 cut(s) 312, 774
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 312, 774
BsnI GGCC 3 cut(s) 266, 365, 834
Bsp143I GATC 2 cut(s) 497, 903
BspACI CCGC 2 cut(s) 721, 813
BspANI GGCC 3 cut(s) 266, 365, 834
BspCNI CTCAG 5 cut(s) 203, 527, 704, 838, 920
BspMI ACCTGC 1 cut(s) 174
BspOI GCTAGC 1 cut(s) 602
BspPI GGATC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 2 cut(s) 300, 660
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 2 cut(s) 177, 393
BssMI GATC 2 cut(s) 497, 903
BssNAI GTATAC 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 791, 908
BstC8I GCNNGC 3 cut(s) 600, 777, 781
BstDEI CTNAG 6 cut(s) 190, 514, 691, 701, 825, 907
BstF5I GGATG 1 cut(s) 455
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 2 cut(s) 500, 906
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 2 cut(s) 497, 903
BstMWI GCNNNNNNNGC 3 cut(s) 241, 590, 599
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 783
BstSCI CCNGG 2 cut(s) 177, 392
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 231, 593
BstXI CCANNNNNNTGG 1 cut(s) 212
BstZ17I GTATAC 1 cut(s) 520
BsuRI GGCC 3 cut(s) 266, 365, 834
BtsCI GGATG 1 cut(s) 455
BtsI GCAGTG 3 cut(s) 346, 421, 593
BtsIMutI CAGTG 3 cut(s) 346, 421, 593
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 600, 777, 781
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 2 cut(s) 265, 832
Csp6I GTAC 6 cut(s) 107, 467, 486, 547, 843, 871
CviAII CATG 6 cut(s) 28, 634, 668, 685, 780, 874
CviQI GTAC 6 cut(s) 107, 467, 486, 547, 843, 871
DdeI CTNAG 6 cut(s) 190, 514, 691, 701, 825, 907
DpnI GATC 2 cut(s) 499, 905
DpnII GATC 2 cut(s) 497, 903
DraI TTTAAA 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 791, 908
EarI CTCTTC 2 cut(s) 791, 908
EciI GGCGGA 1 cut(s) 828
Eco57I CTGAAG 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 559
FaeI CATG 6 cut(s) 31, 637, 671, 688, 783, 877
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 2 cut(s) 312, 774
FatI CATG 6 cut(s) 27, 633, 667, 684, 779, 873
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 245, 582, 722
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 3 cut(s) 245, 582, 722
FspBI CTAG 3 cut(s) 329, 599, 938
GlaI GCGC 1 cut(s) 434
GluI GCNGC 3 cut(s) 245, 582, 722
GsuI CTGGAG 1 cut(s) 677
HaeIII GGCC 3 cut(s) 266, 365, 834
HapII CCGG 2 cut(s) 393, 846
HhaI GCGC 1 cut(s) 435
Hin1II CATG 6 cut(s) 31, 637, 671, 688, 783, 877
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 48, 196, 762
HpaII CCGG 2 cut(s) 393, 846
HphI GGTGA 3 cut(s) 103, 112, 868
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 5 cut(s) 193, 312, 440, 828, 910
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 797
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 8 cut(s) 87, 169, 247, 254, 339, 557, 680, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 590, 599
HpyF3I CTNAG 6 cut(s) 190, 514, 691, 701, 825, 907
Hsp92II CATG 6 cut(s) 31, 637, 671, 688, 783, 877
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 497, 903
Lsp1109I GCAGC 2 cut(s) 231, 593
LweI GCATC 1 cut(s) 729
MaeI CTAG 3 cut(s) 329, 599, 938
MaeIII GTNAC 2 cut(s) 418, 451
MalI GATC 2 cut(s) 499, 905
MboI GATC 2 cut(s) 497, 903
MboII GAAGA 2 cut(s) 778, 925
MfeI CAATTG 2 cut(s) 229, 889
MluCI AATT 9 cut(s) 147, 158, 208, 229, 604, 645, 816, 889, 930
MlyI GAGTC 2 cut(s) 57, 756
MmeI TCCRAC 2 cut(s) 303, 475
MnlI CCTC 8 cut(s) 133, 327, 371, 376, 391, 434, 701, 794
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 3 cut(s) 80, 770, 792
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 2 cut(s) 393, 846
MspR9I CCNGG 2 cut(s) 179, 394
MunI CAATTG 2 cut(s) 229, 889
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 241, 590, 599
NciI CCSGG 1 cut(s) 394
NdeII GATC 2 cut(s) 497, 903
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 6 cut(s) 31, 637, 671, 688, 783, 877
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 783
PaeI GCATGC 1 cut(s) 783
PaqCI CACCTGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 246, 583, 723
PleI GAGTC 2 cut(s) 56, 756
PpsI GAGTC 2 cut(s) 56, 756
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 2 cut(s) 265, 832
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 6 cut(s) 108, 468, 487, 548, 844, 872
RsaNI GTAC 6 cut(s) 107, 467, 486, 547, 843, 871
SaqAI TTAA 3 cut(s) 80, 770, 792
SatI GCNGC 3 cut(s) 245, 582, 722
Sau3AI GATC 2 cut(s) 497, 903
Sau96I GGNCC 2 cut(s) 265, 832
SchI GAGTC 2 cut(s) 57, 756
ScrFI CCNGG 2 cut(s) 179, 394
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 1 cut(s) 489
SpeI ACTAGT 1 cut(s) 937
SphI GCATGC 1 cut(s) 783
Sse9I AATT 9 cut(s) 147, 158, 208, 229, 604, 645, 816, 889, 930
SsiI CCGC 2 cut(s) 721, 813
SspMI CTAG 3 cut(s) 329, 599, 938
StyD4I CCNGG 2 cut(s) 177, 392
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 1 cut(s) 357
TasI AATT 9 cut(s) 147, 158, 208, 229, 604, 645, 816, 889, 930
TatI WGTACW 2 cut(s) 106, 485
TauI GCSGC 1 cut(s) 724
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 80, 770, 792
Tru9I TTAA 3 cut(s) 80, 770, 792
TscAI CASTG 3 cut(s) 346, 421, 600
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 244, 581
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 171, 816
TspRI CASTG 3 cut(s) 346, 421, 600
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 783
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 3 cut(s) 329, 599, 938
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.