Rh4AG410400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000475
Physical Location & Seq
Reverse (-)
70987588 .. 70987953
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG410400.1

Sequence Viewer

Length: 366 bp
ATGCTCATATCTGTTACCTCTTGGGTTCTATATATCACCATTAGCTTTGCCTTAGTTCAACTTTCCAAACTGATCACGTTCCTCGCTACGGTTACAGCTATTGATTCTGCTTCAAGAATATATAAGGGCGGAGCTGGGAGGTCAATGGGTCTCCGAGATCTTCTTCGAAACTCCATCATCAGAAAAAGGTGGCAGAAGTCTACATGCGCATACATAATCATGCATTGGTTCTCCTCTGTGTCAGAGGCTGTTCTCCTCTATGGTAAGGCAGGTCCGTTGCGCTTATTGAGAAATGAGTTCTACATTTCTTCACTCAGGTTGGGGTCTCTTTTGTGCGCGACGAGTACAGCGCGTGGTGGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

10.53

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 200
AccII CGCG 2 cut(s) 338, 352
AciI CCGC 1 cut(s) 129
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 59, 114
AluBI AGCT 3 cut(s) 45, 98, 134
AluI AGCT 3 cut(s) 45, 98, 134
Alw26I GTCTC 2 cut(s) 155, 330
AlwNI CAGNNNCTG 1 cut(s) 248
AspLEI GCGC 4 cut(s) 209, 282, 338, 352
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 272
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 155, 330
BfuAI ACCTGC 1 cut(s) 260
BglII AGATCT 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 166
BsaI GGTCTC 2 cut(s) 155, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 328
BseRI GAGGAG 2 cut(s) 223, 245
BseYI CCCAGC 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 338, 352
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 155, 330
Bso31I GGTCTC 2 cut(s) 155, 330
Bsp119I TTCGAA 1 cut(s) 166
Bsp143I GATC 2 cut(s) 72, 157
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 2 cut(s) 338, 352
BspMI ACCTGC 1 cut(s) 260
BspT104I TTCGAA 1 cut(s) 166
BspTNI GGTCTC 2 cut(s) 155, 330
BssMI GATC 2 cut(s) 72, 157
Bst4CI ACNGT 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 52, 314
BstFNI CGCG 2 cut(s) 338, 352
BstHHI GCGC 4 cut(s) 209, 282, 338, 352
BstKTI GATC 2 cut(s) 75, 160
BstMAI GTCTC 2 cut(s) 155, 330
BstMBI GATC 2 cut(s) 72, 157
BstNSI RCATGY 1 cut(s) 207
BstUI CGCG 2 cut(s) 338, 352
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BveI ACCTGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 4 cut(s) 209, 282, 338, 352
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 345
CviAII CATG 2 cut(s) 204, 220
CviJI RGCY 4 cut(s) 45, 98, 134, 248
CviKI_1 RGCY 4 cut(s) 45, 98, 134, 248
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 52, 314
DpnI GATC 2 cut(s) 74, 159
DpnII GATC 2 cut(s) 72, 157
EciI GGCGGA 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 155, 330
Eco47I GGWCC 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 2 cut(s) 207, 223
FatI CATG 2 cut(s) 203, 219
FbaI TGATCA 1 cut(s) 72
FblI GTMKAC 1 cut(s) 200
FspAI RTGCGCAY 1 cut(s) 208
FspI TGCGCA 1 cut(s) 208
GlaI GCGC 4 cut(s) 208, 281, 337, 351
GsaI CCCAGC 1 cut(s) 138
HhaI GCGC 4 cut(s) 209, 282, 338, 352
Hin1II CATG 2 cut(s) 207, 223
Hin6I GCGC 4 cut(s) 207, 280, 336, 350
HinP1I GCGC 4 cut(s) 207, 280, 336, 350
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 155, 182, 244
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 52, 314
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 2 cut(s) 207, 223
HspAI GCGC 4 cut(s) 207, 280, 336, 350
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 72, 157
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 120, 255, 301
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 13, 91
MalI GATC 2 cut(s) 74, 159
MboI GATC 2 cut(s) 72, 157
MboII GAAGA 3 cut(s) 152, 155, 300
MflI RGATCY 1 cut(s) 157
MluCI AATT 1 cut(s) 361
MnlI CCTC 6 cut(s) 28, 92, 132, 238, 244, 266
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 1 cut(s) 364
MslI CAYNNNNRTG 1 cut(s) 218
MvnI CGCG 2 cut(s) 338, 352
NdeII GATC 2 cut(s) 72, 157
NlaIII CATG 2 cut(s) 207, 223
NsbI TGCGCA 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 207
NspV TTCGAA 1 cut(s) 166
PfeI GAWTC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 364
Sau3AI GATC 2 cut(s) 72, 157
Sau96I GGNCC 1 cut(s) 272
SetI ASST 9 cut(s) 20, 47, 80, 100, 136, 143, 191, 274, 320
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 361
SsiI CCGC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 166
TasI AATT 1 cut(s) 361
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TspGWI ACGGA 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.