MD16G1090600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000475
Physical Location & Seq
Forward (+)
6301883 .. 6302878
996 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1090600.v1.1.491

Sequence Viewer

Length: 996 bp
ATGGAGATGGAAAGCAATCTTGTTATGAAGAATCAGAAGCTGGGAACATCGGACATTCTCAGGCAAGCTCTTATAATCCCTGCCAGAAACATCAAATTCTTTATTTTCGCAATCCTCGCCTCCCTTCCTCTCTTCTGTTTCTTGATTTACTATGAACCCCATCTCCAAAAAATCATGGTTGAAACCTCGAAAATCCTCAACCCCCCACGAGAAGCCGACATCAACGGCTACTTGACTTACTTCGACTTGAGCTGGTCAATACCAATTGACATATCAAGAAAGTTGAACCAAGATTTTCCCAATGAGTTATTTTATCTGGAATTTCTCTATCTGGTGCCTCTCCATATCCTCTACCTCGTAACCGCGATTCCGATTGTTTACTTGGGATCCAAGATACACACAGAAGAGAGTCCAGTGATGACTCTCAAAGATATGGTGAAAAAACCCTTTGACAAAAAAAGGCTGAAGGGAACTTTTGTAACATATTTTTATGTTCTTGTGTTGTCAAGTTGTACTCTGCTGGGGCTGACATGGTTGGGAATAACCTACTATGCTGTCTTTCGCAACTTCGAGCATTTCGATGCTTTGTTCTATGCCGTACTGTGTTGGCCAGCATTTGTAGGGCTTCTGGCAATGTTTTCGGCATGGAGTGCGGTGTGGAACATGAGCATTGTGATTTCGATACTGGAGGGAGGGAGCGGAATCAAGGTGTTTGGAGAGGCGATATATTTGAGCAGCGGAAGCGAGTGGAGGGGGTTTATTTTGATGCTCATTTTCTTTGCCTGGGAAGCAAGTTTGAGGCTGCCTTGCATCTATTTCGGCTGCTACGAAAGCAGGCATTATTTTGGTGGTATTCTTGCGCAGGTTTGCTTGTTCTGCTTTGGGAATGTGCTGAAGTGGATTGTCTGCATCGTATATTTCTACGATTCCAAGAACCGGGCGTTGGAGAAGAAATTGAAGATGCAGGCCAAGAAGAGAGGTGAAAGCATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.24

Weight (kDa)

8.75

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
Acc16I TGCGCA 1 cut(s) 861
Acc36I ACCTGC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 334
AccBSI CCGCTC 1 cut(s) 699
AccII CGCG 1 cut(s) 365
AciI CCGC 4 cut(s) 363, 653, 699, 738
AclWI GGATC 2 cut(s) 381, 394
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 2 cut(s) 95, 320
AcuI CTGAAG 2 cut(s) 485, 914
AfaI GTAC 2 cut(s) 514, 600
AfiI CCNNNNNNNGG 2 cut(s) 936, 943
AgsI TTSAA 3 cut(s) 182, 286, 958
AjnI CCWGG 1 cut(s) 782
AjuI GAANNNNNNNTTGG 2 cut(s) 926, 958
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 40, 68, 252
AluI AGCT 3 cut(s) 40, 68, 252
AlwI GGATC 2 cut(s) 381, 394
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 2 cut(s) 608, 966
ApeKI GCWGC 3 cut(s) 735, 802, 822
ApoI RAATTY 2 cut(s) 95, 320
AspLEI GCGC 1 cut(s) 862
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 2 cut(s) 448, 992
BalI TGGCCA 1 cut(s) 610
BamHI GGATCC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 207
BbvI GCAGC 3 cut(s) 747, 789, 809
BccI CCATC 1 cut(s) 168
BceAI ACGGC 2 cut(s) 241, 581
BcgI CGANNNNNNTGC 4 cut(s) 621, 655, 799, 833
BciT130I CCWGG 1 cut(s) 784
BcnI CCSGG 1 cut(s) 938
BfuAI ACCTGC 1 cut(s) 853
BisI GCNGC 3 cut(s) 736, 803, 823
BlsI GCNGC 3 cut(s) 737, 804, 824
Bme1390I CCNGG 2 cut(s) 784, 938
BmiI GGNNCC 2 cut(s) 336, 388
BmrFI CCNGG 2 cut(s) 784, 938
BmsI GCATC 5 cut(s) 571, 756, 819, 918, 951
BpmI CTGGAG 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 783
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 936, 943
Bse1I ACTGG 2 cut(s) 413, 690
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 784
BseDI CCNNGG 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 936, 943
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 413, 690
BseXI GCAGC 3 cut(s) 747, 789, 809
BseYI CCCAGC 2 cut(s) 40, 520
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 2 cut(s) 610, 968
BshNI GGYRCC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 937
BslI CCNNNNNNNGG 2 cut(s) 936, 943
BsnI GGCC 2 cut(s) 610, 968
Bsp143I GATC 1 cut(s) 386
BspACI CCGC 4 cut(s) 363, 653, 699, 738
BspANI GGCC 2 cut(s) 610, 968
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 336, 388
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 2 cut(s) 381, 394
BspT107I GGYRCC 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 2 cut(s) 413, 690
BssECI CCNNGG 1 cut(s) 783
BssMI GATC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 784
Bst4CI ACNGT 1 cut(s) 603
Bst6I CTCTTC 3 cut(s) 137, 399, 968
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 4 cut(s) 66, 612, 836, 966
BstDEI CTNAG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 1 cut(s) 389
BstMBI GATC 1 cut(s) 386
BstMWI GCNNNNNNNGC 6 cut(s) 116, 650, 741, 788, 831, 876
BstNI CCWGG 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 782, 936
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 747, 789, 809
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 2 cut(s) 610, 968
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 4 cut(s) 66, 612, 836, 966
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 862
Csp6I GTAC 2 cut(s) 513, 599
CviAII CATG 4 cut(s) 175, 531, 645, 664
CviQI GTAC 2 cut(s) 513, 599
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 3 cut(s) 137, 399, 968
EarI CTCTTC 3 cut(s) 137, 399, 968
Eco57I CTGAAG 2 cut(s) 485, 914
EcoRII CCWGG 1 cut(s) 782
FaeI CATG 4 cut(s) 178, 534, 648, 667
FatI CATG 4 cut(s) 174, 530, 644, 663
Fnu4HI GCNGC 3 cut(s) 736, 803, 823
Fsp4HI GCNGC 3 cut(s) 736, 803, 823
FspI TGCGCA 1 cut(s) 861
GlaI GCGC 1 cut(s) 861
GluI GCNGC 3 cut(s) 736, 803, 823
GsaI CCCAGC 2 cut(s) 44, 524
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 2 cut(s) 610, 968
HapII CCGG 1 cut(s) 937
HhaI GCGC 1 cut(s) 862
Hin1II CATG 4 cut(s) 178, 534, 648, 667
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HinfI GANTC 6 cut(s) 31, 367, 409, 421, 702, 926
HpaII CCGG 1 cut(s) 937
HphI GGTGA 2 cut(s) 448, 992
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 36, 52, 372
Hpy188III TCNNGA 3 cut(s) 142, 276, 317
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 134, 460
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4V TGCA 3 cut(s) 810, 909, 964
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 650, 741, 788, 831, 876
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 4 cut(s) 178, 534, 648, 667
HspAI GCGC 1 cut(s) 860
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 696
Lsp1109I GCAGC 3 cut(s) 747, 789, 809
LweI GCATC 5 cut(s) 571, 756, 819, 918, 951
MaeIII GTNAC 2 cut(s) 358, 478
MalI GATC 1 cut(s) 388
MbiI CCGCTC 1 cut(s) 699
MboI GATC 1 cut(s) 386
MboII GAAGA 6 cut(s) 40, 124, 416, 961, 970, 985
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 386
MlsI TGGCCA 1 cut(s) 610
MluCI AATT 4 cut(s) 95, 264, 320, 953
MluNI TGGCCA 1 cut(s) 610
MlyI GAGTC 2 cut(s) 415, 418
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 610
MscI TGGCCA 1 cut(s) 610
MslI CAYNNNNRTG 1 cut(s) 579
Msp20I TGGCCA 1 cut(s) 610
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 2 cut(s) 784, 938
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 784
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 6 cut(s) 116, 650, 741, 788, 831, 876
NciI CCSGG 1 cut(s) 938
NdeII GATC 1 cut(s) 386
NlaIII CATG 4 cut(s) 178, 534, 648, 667
NlaIV GGNNCC 2 cut(s) 336, 388
NsbI TGCGCA 1 cut(s) 861
PcsI WCGNNNNNNNCGW 2 cut(s) 576, 825
PfeI GAWTC 4 cut(s) 31, 367, 702, 926
PkrI GCNGC 3 cut(s) 737, 804, 824
PleI GAGTC 2 cut(s) 415, 417
PpsI GAGTC 2 cut(s) 415, 417
PsiI TTATAA 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 782
PspFI CCCAGC 2 cut(s) 40, 520
PspGI CCWGG 1 cut(s) 782
PspN4I GGNNCC 2 cut(s) 336, 388
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 2 cut(s) 514, 600
RsaNI GTAC 2 cut(s) 513, 599
RseI CAYNNNNRTG 1 cut(s) 579
SatI GCNGC 3 cut(s) 736, 803, 823
Sau3AI GATC 1 cut(s) 386
SchI GAGTC 2 cut(s) 415, 418
ScrFI CCNGG 2 cut(s) 784, 938
SetI ASST 9 cut(s) 42, 70, 188, 254, 357, 548, 711, 867, 982
SfaNI GCATC 5 cut(s) 571, 756, 819, 918, 951
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 4 cut(s) 95, 264, 320, 953
SsiI CCGC 4 cut(s) 363, 653, 699, 738
StyD4I CCNGG 2 cut(s) 782, 936
TaaI ACNGT 1 cut(s) 603
TaqI TCGA 5 cut(s) 188, 243, 570, 579, 680
TasI AATT 4 cut(s) 95, 264, 320, 953
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 4 cut(s) 31, 367, 702, 926
TscAI CASTG 1 cut(s) 420
TseI GCWGC 3 cut(s) 735, 802, 822
TspDTI ATGAA 2 cut(s) 41, 168
TspRI CASTG 1 cut(s) 420
XapI RAATTY 2 cut(s) 95, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.