Rroxscaffold_5G00384630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000475
Physical Location & Seq
Reverse (-)
63913682 .. 63914626
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384630.1

Sequence Viewer

Length: 945 bp
ATGGAAAGCAACCATATCATCATGTTGAAGCAAAAGCTTGGAGTCTTTGATATACTCAAAGAAGCTCTTTATTTAATCTGCAAGAACCACAGCTTTATTGCACTCACCTTTCTCACCTCTCTACCCTTTTTCTGTTTCTCAATTTACTATGAATCACACCTGCAAAGAACCCTGGTTCAAATCTCAGAGTTTCTAAACCAAAATTCTGGTTTTTTCAACTACAATTGGCAAACACAGCTGCATACTGCAACAAGTATGGCCCAGATGTTTTCCAACAACTTGATACAACTGGGACTTCTTTATCTGATACCTCTCCATCTCCTAGAGCTTTGCAGTGCTTTTGTGATTGTCGATTTGGCCTCAAAGTTAGGAGGAAAAGGGAGGTTTGCGGAGGTAACTGGTGCTGGCAGTGTTACCAGAATGGTGCGCTTCAGAGGAACTCTTGTCACATCCATCTGGGTACTTTTCTTATCAACTTGTACTGTAGTTGGATCAGTATGGTTAGTCTCAGTATACTATGTTCTATTGAGAAACTTTGGGTACTACAATACATATTGTAGAGTGCTATACAAGGCAGCTTGTATGGCACTGCTAGCAAATTACTTAGAGTGGGGTGCTATATGGAACATGAGCATTGTAATTTCAATACTGGAGAACAGACATGGGGCTAATGCACTCATGTTCTCAGCCTATCTAAGCAGAGGTAGAGAACGACGGCAAGGACTAGTTTTGATGCTTATTTTCGGTGTCTGGGGACTCGGTTTAAGGCTGGCATGCCTCTTCTTTAAATGCTATGAAGGAAAAGGCGGAATTGTTGCTCAGATGGGCCTTTTCTGTACTGGCAATGTGGTGAAGTGGGTTGCGTACATGATTTATTCCTACAATTGCAAAATCCTGATCTCAGAGAAGAGAGTTGATGTGGAAATTGGACCAGCTGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

35.68

Weight (kDa)

9.18

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 513
AciI CCGC 2 cut(s) 389, 807
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 415
AfaI GTAC 5 cut(s) 462, 481, 542, 838, 866
AgsI TTSAA 4 cut(s) 28, 179, 217, 645
AhlI ACTAGT 1 cut(s) 724
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 7 cut(s) 37, 65, 93, 238, 328, 578, 935
AluI AGCT 7 cut(s) 37, 65, 93, 238, 328, 578, 935
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 1 cut(s) 499
AoxI GGCC 3 cut(s) 258, 357, 826
ApeKI GCWGC 2 cut(s) 238, 575
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 3 cut(s) 259, 826, 929
AsuHPI GGTGA 3 cut(s) 97, 106, 862
AsuNHI GCTAGC 1 cut(s) 592
AvaII GGWCC 1 cut(s) 929
BbvI GCAGC 2 cut(s) 225, 587
BccI CCATC 3 cut(s) 324, 461, 817
BceAI ACGGC 1 cut(s) 731
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 511
BcuI ACTAGT 1 cut(s) 724
BfaI CTAG 3 cut(s) 323, 593, 725
BfmI CTRYAG 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 2 cut(s) 239, 576
BlsI GCNGC 2 cut(s) 240, 577
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 929
BmgT120I GGNCC 3 cut(s) 259, 826, 929
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 723
BmtI GCTAGC 1 cut(s) 596
BmuI ACTGGG 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 4 cut(s) 294, 403, 654, 844
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 6 cut(s) 198, 522, 699, 833, 915, 927
BseNI ACTGG 4 cut(s) 294, 403, 654, 844
BseXI GCAGC 2 cut(s) 225, 587
BshFI GGCC 3 cut(s) 260, 359, 828
BslFI GGGAC 2 cut(s) 306, 768
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 2 cut(s) 306, 768
BsnI GGCC 3 cut(s) 260, 359, 828
Bsp143I GATC 2 cut(s) 491, 897
BspACI CCGC 2 cut(s) 389, 807
BspANI GGCC 3 cut(s) 260, 359, 828
BspCNI CTCAG 6 cut(s) 197, 521, 698, 832, 914, 928
BspMI ACCTGC 1 cut(s) 168
BspOI GCTAGC 1 cut(s) 596
BspPI GGATC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 4 cut(s) 294, 403, 654, 844
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 491, 897
BssNAI GTATAC 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 2 cut(s) 785, 902
BstC8I GCNNGC 4 cut(s) 406, 594, 771, 775
BstDEI CTNAG 8 cut(s) 184, 508, 604, 685, 695, 819, 901, 936
BstF5I GGATG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 2 cut(s) 494, 900
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 2 cut(s) 491, 897
BstMWI GCNNNNNNNGC 3 cut(s) 235, 584, 593
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 225, 587
BstXI CCANNNNNNTGG 1 cut(s) 206
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 3 cut(s) 260, 359, 828
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 3 cut(s) 340, 415, 587
BtsIMutI CAGTG 3 cut(s) 340, 415, 587
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 4 cut(s) 406, 594, 771, 775
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 3 cut(s) 259, 826, 929
Csp6I GTAC 5 cut(s) 461, 480, 541, 837, 865
CviAII CATG 6 cut(s) 22, 628, 662, 679, 774, 868
CviQI GTAC 5 cut(s) 461, 480, 541, 837, 865
DdeI CTNAG 8 cut(s) 184, 508, 604, 685, 695, 819, 901, 936
DpnI GATC 2 cut(s) 493, 899
DpnII GATC 2 cut(s) 491, 897
DraI TTTAAA 1 cut(s) 787
Eam1104I CTCTTC 2 cut(s) 785, 902
EarI CTCTTC 2 cut(s) 785, 902
EciI GGCGGA 1 cut(s) 822
Eco47I GGWCC 1 cut(s) 929
Eco57I CTGAAG 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 6 cut(s) 25, 631, 665, 682, 777, 871
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 2 cut(s) 306, 768
FatI CATG 6 cut(s) 21, 627, 661, 678, 773, 867
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 239, 576
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 2 cut(s) 239, 576
FspBI CTAG 3 cut(s) 323, 593, 725
GlaI GCGC 1 cut(s) 428
GluI GCNGC 2 cut(s) 239, 576
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 3 cut(s) 260, 359, 828
HhaI GCGC 1 cut(s) 429
Hin1II CATG 6 cut(s) 25, 631, 665, 682, 777, 871
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 42, 152, 756
HphI GGTGA 3 cut(s) 97, 106, 862
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 5 cut(s) 187, 306, 434, 822, 904
Hpy188III TCNNGA 1 cut(s) 895
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 1 cut(s) 717
HpyAV CCTTC 1 cut(s) 791
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4V TGCA 8 cut(s) 81, 101, 163, 241, 248, 333, 674, 888
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 584, 593
HpyF3I CTNAG 8 cut(s) 184, 508, 604, 685, 695, 819, 901, 936
Hsp92II CATG 6 cut(s) 25, 631, 665, 682, 777, 871
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 2 cut(s) 491, 897
Lsp1109I GCAGC 2 cut(s) 225, 587
LweI GCATC 1 cut(s) 723
MaeI CTAG 3 cut(s) 323, 593, 725
MaeIII GTNAC 3 cut(s) 394, 412, 445
MalI GATC 2 cut(s) 493, 899
MboI GATC 2 cut(s) 491, 897
MboII GAAGA 2 cut(s) 772, 919
MfeI CAATTG 2 cut(s) 223, 883
MluCI AATT 8 cut(s) 141, 202, 223, 598, 639, 810, 883, 924
MlyI GAGTC 2 cut(s) 51, 750
MmeI TCCRAC 2 cut(s) 297, 469
MnlI CCTC 9 cut(s) 127, 321, 365, 370, 375, 385, 428, 695, 788
MseI TTAA 3 cut(s) 74, 764, 786
MspA1I CMGCKG 2 cut(s) 238, 935
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 2 cut(s) 223, 883
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 235, 584, 593
NdeII GATC 2 cut(s) 491, 897
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 6 cut(s) 25, 631, 665, 682, 777, 871
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 777
PaeI GCATGC 1 cut(s) 777
PaqCI CACCTGC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 240, 577
PleI GAGTC 2 cut(s) 50, 750
PpsI GAGTC 2 cut(s) 50, 750
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 3 cut(s) 259, 826, 929
PsrI GAACNNNNNNTAC 2 cut(s) 504, 536
PvuII CAGCTG 2 cut(s) 238, 935
RsaI GTAC 5 cut(s) 462, 481, 542, 838, 866
RsaNI GTAC 5 cut(s) 461, 480, 541, 837, 865
SaqAI TTAA 3 cut(s) 74, 764, 786
SatI GCNGC 2 cut(s) 239, 576
Sau3AI GATC 2 cut(s) 491, 897
Sau96I GGNCC 3 cut(s) 259, 826, 929
SchI GAGTC 2 cut(s) 51, 750
ScrFI CCNGG 1 cut(s) 173
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 929
SpeI ACTAGT 1 cut(s) 724
SphI GCATGC 1 cut(s) 777
Sse9I AATT 8 cut(s) 141, 202, 223, 598, 639, 810, 883, 924
SsiI CCGC 2 cut(s) 389, 807
SspMI CTAG 3 cut(s) 323, 593, 725
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 484
TaqI TCGA 1 cut(s) 351
TasI AATT 8 cut(s) 141, 202, 223, 598, 639, 810, 883, 924
TatI WGTACW 2 cut(s) 479, 836
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 3 cut(s) 74, 764, 786
Tru9I TTAA 3 cut(s) 74, 764, 786
TscAI CASTG 3 cut(s) 340, 415, 594
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 238, 575
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 165, 810
TspRI CASTG 3 cut(s) 340, 415, 594
VpaK11BI GGWCC 1 cut(s) 929
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 777
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 3 cut(s) 323, 593, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.