Rh4DG417000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000475
Physical Location & Seq
Reverse (-)
62595814 .. 62596809
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG417000.1

Sequence Viewer

Length: 996 bp
ATGGAGATAGAAAGCAATATGATCATCAAGAATGATAAGTTAGAAGCCTTTGATATTCTCAAAAAAGCCTTCACAATCTCAGCCACAAACATCAAATTCTTGATCTTCACCATTCTCACCTCCCTCCCTCTCTTCTGTTTCTTGGTTTACTATGAACCTTTTCTCCAAAGATTCATCCTTGAAATCTCAGAAATACTAAGGCCCTCCAAAGATGATTACTTCGGTTATTTGTCTTCAAGACCATTTCAATTGTCAATACCAAGTTTACCAACTGACATGACAACAAAACTAAACAATGAGTTTCCTGGTGGGTTGGTTCAGATAGCCCTTCTCTATCTGATCCCTCTCCATCTCCTAGAGCTCAGCACCGTCCTTGTGATTGTTGATTTGGCATCAAAGACATATACTACACAAGAAGAAGAAGAGCCACCATTGACTCTCATGGAAATGGTTCATAAGCCCTTCGACGTAACTAGAGTCCTAGGTACTTTGGTCACATTTGTGTATGTTGTGATCATGTCGTCTAGTTCTCTACTAGGTTTGGTATGGTTAGCAGTAATATATTATGTTGTCACCATGTTCTTTTACGATGTGCTCGTCATCATGTGGTGTTGGGTGGGATTTGTGGGACTTTTGACACTGTATTTGGGATGGATTGCCGCATTGAACATGAGTGTTGTGATTTCAATTCTTGAGGGGAGATATGGAACCAAGGCAATTGCTTTAGCCATTTGTTATAGTGTTGGTAACGAGTGGAGAGGGTTTCGTTTGATGCTTGTTTTCTTTGCTTGGGAAGTTGGTTTGAGGTTGCCCTGCATCTATTTTGGCTGCAAAGGAACTTGGAGTGTTGGCATTTTGACACAGATTGGCTTCTTCTGTTTGGGAAATGTGGTGAAGTGGGTCGTCTTCACGATTTACTTCTACGATTGCAAGAACCGTGAAATAGAGAGGAAGATGATGATGAAAGCTAAGAAGAGAGCTGTTGAAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

37.96

Weight (kDa)

6.74

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 660
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 487
AgsI TTSAA 6 cut(s) 182, 237, 248, 667, 687, 986
AjnI CCWGG 1 cut(s) 304
AleI CACNNNNGTG 1 cut(s) 500
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 361, 968, 980
AluI AGCT 3 cut(s) 361, 968, 980
Alw21I GWGCWC 2 cut(s) 363, 597
AlwI GGATC 1 cut(s) 334
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 828
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
Asp700I GAANNNNTTC 2 cut(s) 159, 450
AspA2I CCTAGG 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 100, 109, 565, 904
AvrII CCTAGG 1 cut(s) 481
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 225, 898
Bbv12I GWGCWC 2 cut(s) 363, 597
BbvI GCAGC 1 cut(s) 815
BccI CCATC 2 cut(s) 357, 645
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 2 cut(s) 21, 513
BfaI CTAG 5 cut(s) 356, 474, 482, 525, 536
BisI GCNGC 2 cut(s) 660, 829
BlnI CCTAGG 1 cut(s) 481
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 2 cut(s) 661, 830
Bme1390I CCNGG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 401, 762, 825
BpiI GAAGAC 2 cut(s) 225, 898
Bpu1102I GCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 481, 711
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 481, 711
BseGI GGATG 2 cut(s) 174, 656
BseMII CTCAG 3 cut(s) 93, 201, 376
BseXI GCAGC 1 cut(s) 815
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 363, 597
BslFI GGGAC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 363, 597
Bsp143I GATC 4 cut(s) 21, 102, 339, 513
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 1 cut(s) 660
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 3 cut(s) 92, 200, 375
BspLI GGNNCC 1 cut(s) 709
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 481, 711
BssMI GATC 4 cut(s) 21, 102, 339, 513
BssT1I CCWWGG 2 cut(s) 481, 711
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 370, 642, 938
Bst6I CTCTTC 3 cut(s) 137, 417, 968
BstDEI CTNAG 5 cut(s) 79, 187, 197, 362, 969
BstF5I GGATG 2 cut(s) 174, 656
BstKTI GATC 4 cut(s) 24, 105, 342, 516
BstMBI GATC 4 cut(s) 21, 102, 339, 513
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 815
BstV2I GAAGAC 2 cut(s) 225, 898
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 174, 656
BtsIMutI CAGTG 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 486
CviAII CATG 6 cut(s) 277, 442, 517, 577, 604, 670
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 5 cut(s) 79, 187, 197, 362, 969
DpnI GATC 4 cut(s) 23, 104, 341, 515
DpnII GATC 4 cut(s) 21, 102, 339, 513
Eam1104I CTCTTC 3 cut(s) 137, 417, 968
EarI CTCTTC 3 cut(s) 137, 417, 968
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 481, 711
Eco24I GRGCYC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 481, 711
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 481, 711
FaeI CATG 6 cut(s) 280, 445, 520, 580, 607, 673
FaqI GGGAC 1 cut(s) 642
FatI CATG 6 cut(s) 276, 441, 516, 576, 603, 669
FbaI TGATCA 2 cut(s) 21, 513
Fnu4HI GCNGC 2 cut(s) 660, 829
FokI GGATG 2 cut(s) 161, 663
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 660, 829
FspBI CTAG 5 cut(s) 356, 474, 482, 525, 536
GluI GCNGC 2 cut(s) 660, 829
HaeIII GGCC 1 cut(s) 202
Hin1II CATG 6 cut(s) 280, 445, 520, 580, 607, 673
HinfI GANTC 3 cut(s) 171, 436, 477
HphI GGTGA 4 cut(s) 100, 109, 565, 904
Hpy166II GTNNAC 2 cut(s) 148, 266
Hpy188I TCNGA 3 cut(s) 190, 321, 339
Hpy188III TCNNGA 5 cut(s) 28, 100, 237, 692, 910
Hpy8I GTNNAC 2 cut(s) 148, 266
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 79, 338, 472
HpyCH4III ACNGT 3 cut(s) 370, 642, 938
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 3 cut(s) 816, 831, 930
HpyF3I CTNAG 5 cut(s) 79, 187, 197, 362, 969
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 6 cut(s) 280, 445, 520, 580, 607, 673
Ksp22I TGATCA 2 cut(s) 21, 513
Kzo9I GATC 4 cut(s) 21, 102, 339, 513
LguI GCTCTTC 1 cut(s) 417
LpnPI CCDG 3 cut(s) 291, 318, 826
Lsp1109I GCAGC 1 cut(s) 815
LweI GCATC 3 cut(s) 401, 762, 825
MaeI CTAG 5 cut(s) 356, 474, 482, 525, 536
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 4 cut(s) 469, 493, 571, 746
MalI GATC 4 cut(s) 23, 104, 341, 515
MboI GATC 4 cut(s) 21, 102, 339, 513
MfeI CAATTG 2 cut(s) 248, 717
MhlI GDGCHC 2 cut(s) 363, 597
MluCI AATT 4 cut(s) 95, 248, 687, 717
MlyI GAGTC 2 cut(s) 430, 486
MnlI CCTC 9 cut(s) 130, 134, 138, 214, 354, 688, 752, 798, 942
MroXI GAANNNNTTC 2 cut(s) 159, 450
MseI TTAA 1 cut(s) 994
MslI CAYNNNNRTG 2 cut(s) 446, 500
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 2 cut(s) 248, 717
MvaI CCWGG 1 cut(s) 306
NdeII GATC 4 cut(s) 21, 102, 339, 513
NlaIII CATG 6 cut(s) 280, 445, 520, 580, 607, 673
NlaIV GGNNCC 1 cut(s) 709
NmuCI GTSAC 2 cut(s) 493, 571
OliI CACNNNNGTG 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PdmI GAANNNNTTC 2 cut(s) 159, 450
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 661, 830
PleI GAGTC 2 cut(s) 430, 485
PpsI GAGTC 2 cut(s) 430, 485
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 2 cut(s) 446, 500
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 994
SatI GCNGC 2 cut(s) 660, 829
Sau3AI GATC 4 cut(s) 21, 102, 339, 513
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 2 cut(s) 430, 486
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 363, 597
SetI ASST 9 cut(s) 122, 160, 363, 471, 487, 541, 809, 970, 982
SfaNI GCATC 3 cut(s) 401, 762, 825
SmiMI CAYNNNNRTG 2 cut(s) 446, 500
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 4 cut(s) 95, 248, 687, 717
SsiI CCGC 1 cut(s) 660
SspMI CTAG 5 cut(s) 356, 474, 482, 525, 536
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 481, 711
TaaI ACNGT 3 cut(s) 370, 642, 938
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 465
TasI AATT 4 cut(s) 95, 248, 687, 717
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 994
Tru9I TTAA 1 cut(s) 994
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 2 cut(s) 493, 571
TseI GCWGC 1 cut(s) 828
Tsp45I GTSAC 2 cut(s) 493, 571
TspDTI ATGAA 4 cut(s) 163, 168, 443, 977
TspRI CASTG 1 cut(s) 645
XapI RAATTY 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 481
XmnI GAANNNNTTC 2 cut(s) 159, 450
XspI CTAG 5 cut(s) 356, 474, 482, 525, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.