Prupe.1G255400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000475
Physical Location & Seq
Reverse (-)
26609470 .. 26610465
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G255400.1

Sequence Viewer

Length: 996 bp
ATGGAAAGCAACCATACCATGCTGAAGCAAAAGCTAGGATTCTTTGATACATTCAAACAAGCCCTGAGTTTAATCTACAACACTAACTACTTTATTCTACTCACCTTTCTCTCCTCTCTACCTCTCTTCTGCTTCTCAGTTTACTATGAGCTATTGCTCCAAAGAACCCTGGTTCAAATCTCAGAATTTGTAAGGCAACAACACCCTAGTAACTACCACCACAACTGGCAAACACTGCTCCATACGGCTGCCCGAATGACCGATAAATTTCCCAACAACTTGATTCAACTGGGATTTCTTTATGTGGTGCCTCTTCATCTCCTAGAGCTCTGCACTGCTTTTGTCACAGTCAATTTAGCATTGACGACACTCGCAGAAGGAAAAAAAACAGCATCCAAAGCCAATTTTAGAGGCACTCTTGTCACATCCATCTGGGTTCTTTTCTTCTCAACTTGCACTGTACTTGGATCAGTATGGTTAGCATCAATCTACTATGTTATATTGAACAACTTGGGGTACAACTGTAAGCTGTATTTTGGAGTGTTATATAGGGCAGCTTGTATGGCACTGCTGGCAAAGTACTTAGAATGGAGGTCTATATGGAACATGGCCATAGTGGTTTCAATATTGGAGGATGCAAATGGAGCTAATGCATTGATACTATCTGCTCATCTAAGCAGAGGCAACGAGCGGCAAGGGCTTCTCATAACGCTTGTTTTCTCTGTTTTGGGGCTTGCTTTAAGGTGGTCAGGGCTCTTTTTTGAATGCTATGAAAGAGGAAATGGGATTTTTGCTCAGGTTGGGCTTTTCTGCATGGTTAATGTGGTGAAGTGGGTCGTATATATGGTTTATTTTGACAACTGCAAAAGGCGGATTTTGAAGAAGAAAGTTGACATGGAAATGGGAAAAGTTGAGAGGAGTAATCTGAGAACAGAGAAAACAGAACCTGCTGATAATAATAGTTCAGATTGTAGAACAAAACTAGAAACAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.99

Weight (kDa)

9.05

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 691
AciI CCGC 2 cut(s) 691, 871
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 2 cut(s) 185, 266
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 3 cut(s) 462, 518, 581
AgsI TTSAA 7 cut(s) 55, 176, 287, 505, 624, 764, 880
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 6 cut(s) 34, 151, 328, 529, 557, 647
AluI AGCT 6 cut(s) 34, 151, 328, 529, 557, 647
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 1 cut(s) 475
AlwNI CAGNNNCTG 1 cut(s) 947
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 2 cut(s) 248, 554
ApoI RAATTY 2 cut(s) 185, 266
AsuHPI GGTGA 2 cut(s) 94, 838
BaeI ACNNNNGTAYC 2 cut(s) 508, 541
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 2 cut(s) 330, 756
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 235, 566
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 170
BfaI CTAG 4 cut(s) 35, 207, 323, 983
BfuAI ACCTGC 1 cut(s) 955
BisI GCNGC 3 cut(s) 249, 555, 692
BlsI GCNGC 3 cut(s) 250, 556, 693
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 3 cut(s) 401, 491, 625
BmuI ACTGGG 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 795
BsaJI CCNNGG 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 230, 294
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 392, 425, 640
BseMII CTCAG 5 cut(s) 56, 150, 195, 809, 917
BseNI ACTGG 2 cut(s) 230, 294
BseRI GAGGAG 2 cut(s) 103, 931
BseXI GCAGC 2 cut(s) 235, 566
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 611
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 330, 756
Bsp143I GATC 1 cut(s) 467
BspACI CCGC 2 cut(s) 691, 871
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 5 cut(s) 57, 149, 194, 808, 918
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 691
BsrI ACTGG 2 cut(s) 230, 294
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 349, 460, 524
Bst6I CTCTTC 2 cut(s) 131, 318
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 573, 735
BstDEI CTNAG 7 cut(s) 65, 136, 181, 583, 674, 795, 926
BstF5I GGATG 3 cut(s) 392, 425, 640
BstKTI GATC 1 cut(s) 470
BstMBI GATC 1 cut(s) 467
BstMWI GCNNNNNNNGC 6 cut(s) 235, 398, 563, 572, 644, 697
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 235, 566
BsuRI GGCC 1 cut(s) 611
BtsCI GGATG 3 cut(s) 392, 425, 640
BtsI GCAGTG 3 cut(s) 233, 333, 566
BtsIMutI CAGTG 4 cut(s) 233, 333, 456, 566
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 2 cut(s) 573, 735
CaiI CAGNNNCTG 1 cut(s) 947
Csp6I GTAC 3 cut(s) 461, 517, 580
CviAII CATG 4 cut(s) 19, 607, 814, 895
CviQI GTAC 3 cut(s) 461, 517, 580
DdeI CTNAG 7 cut(s) 65, 136, 181, 583, 674, 795, 926
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 2 cut(s) 131, 318
EarI CTCTTC 2 cut(s) 131, 318
EciI GGCGGA 1 cut(s) 886
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 2 cut(s) 330, 756
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 330, 756
FaeI CATG 4 cut(s) 22, 610, 817, 898
FatI CATG 4 cut(s) 18, 606, 813, 894
Fnu4HI GCNGC 3 cut(s) 249, 555, 692
FokI GGATG 3 cut(s) 379, 412, 647
FriOI GRGCYC 2 cut(s) 330, 756
Fsp4HI GCNGC 3 cut(s) 249, 555, 692
FspBI CTAG 4 cut(s) 35, 207, 323, 983
GluI GCNGC 3 cut(s) 249, 555, 692
HaeIII GGCC 1 cut(s) 611
Hin1II CATG 4 cut(s) 22, 610, 817, 898
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 2 cut(s) 39, 283
HphI GGTGA 2 cut(s) 94, 838
Hpy166II GTNNAC 2 cut(s) 142, 892
Hpy188I TCNGA 3 cut(s) 184, 927, 967
Hpy8I GTNNAC 2 cut(s) 142, 892
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 3 cut(s) 349, 460, 524
HpyCH4V TGCA 6 cut(s) 333, 456, 638, 653, 813, 864
HpyF10VI GCNNNNNNNGC 6 cut(s) 235, 398, 563, 572, 644, 697
HpyF3I CTNAG 7 cut(s) 65, 136, 181, 583, 674, 795, 926
Hsp92II CATG 4 cut(s) 22, 610, 817, 898
Kzo9I GATC 1 cut(s) 467
LmnI GCTCC 3 cut(s) 162, 243, 644
Lsp1109I GCAGC 2 cut(s) 235, 566
LweI GCATC 3 cut(s) 401, 491, 625
MaeI CTAG 4 cut(s) 35, 207, 323, 983
MaeIII GTNAC 3 cut(s) 209, 343, 421
MalI GATC 1 cut(s) 469
MbiI CCGCTC 1 cut(s) 691
MboI GATC 1 cut(s) 467
MboII GAAGA 5 cut(s) 118, 305, 436, 892, 895
MhlI GDGCHC 2 cut(s) 330, 756
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 4 cut(s) 185, 266, 352, 403
MluNI TGGCCA 1 cut(s) 611
MnlI CCTC 9 cut(s) 124, 132, 321, 404, 585, 625, 674, 770, 909
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 611
MseI TTAA 3 cut(s) 71, 740, 819
MslI CAYNNNNRTG 1 cut(s) 899
Msp20I TGGCCA 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 770
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 6 cut(s) 235, 398, 563, 572, 644, 697
NdeII GATC 1 cut(s) 467
NlaIII CATG 4 cut(s) 22, 610, 817, 898
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 343, 421
NsiI ATGCAT 1 cut(s) 655
PctI GAATGC 1 cut(s) 770
PfeI GAWTC 2 cut(s) 39, 283
PkrI GCNGC 3 cut(s) 250, 556, 693
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 947
RsaI GTAC 3 cut(s) 462, 518, 581
RsaNI GTAC 3 cut(s) 461, 517, 580
RseI CAYNNNNRTG 1 cut(s) 899
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 71, 740, 819
SatI GCNGC 3 cut(s) 249, 555, 692
Sau3AI GATC 1 cut(s) 467
ScaI AGTACT 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 330, 756
SfaNI GCATC 3 cut(s) 401, 491, 625
SmiMI CAYNNNNRTG 1 cut(s) 899
Sse9I AATT 4 cut(s) 185, 266, 352, 403
SsiI CCGC 2 cut(s) 691, 871
SspI AATATT 1 cut(s) 627
SspMI CTAG 4 cut(s) 35, 207, 323, 983
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 349, 460, 524
TaqII GACCGA 1 cut(s) 275
TasI AATT 4 cut(s) 185, 266, 352, 403
TatI WGTACW 2 cut(s) 460, 579
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 2 cut(s) 39, 283
Tru1I TTAA 3 cut(s) 71, 740, 819
Tru9I TTAA 3 cut(s) 71, 740, 819
TscAI CASTG 4 cut(s) 240, 340, 463, 573
TseFI GTSAC 2 cut(s) 343, 421
TseI GCWGC 2 cut(s) 248, 554
Tsp45I GTSAC 2 cut(s) 343, 421
TspDTI ATGAA 2 cut(s) 305, 786
TspRI CASTG 4 cut(s) 240, 340, 463, 573
XapI RAATTY 2 cut(s) 185, 266
XspI CTAG 4 cut(s) 35, 207, 323, 983
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.