FvH4_6g20500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000475
Physical Location & Seq
Forward (+)
14115404 .. 14117023
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20500.t1

Sequence Viewer

Length: 996 bp
ATGGAGATGAAGAGCAGCCTGATGTTGACGAACCAGAAGCTGGGTGGCTTTGATATTCTTAGAAAAGCTTTTGGTATCTCTGCCAGAAACATCAACTTCTTTGTCTTCACTATCTTTGCTTCACTTCCTCTCTTCTGTTTCTTGGTTTACTATCAACCTTTCCTGCAAAAAATCCAGGATCAAGTATCACAAATTCTAAAGCATCCGGCCTTTGTTTATTATTTTGAGGACTACATGTTTGATTGGTCCAATTTTACTTGGTCATTACCATTTGATGTAACCCGGGAATGGAACACAGAGTTTCCTTGTGAGTTGATTCAACAATCTCTTCTCTATCTGGTGTCTCTCCATCTCCTAGAGCTCATCACCATGCTTGCAATTGCTAATTTGACCTCGAAGATATACAAAGAAGAGACGCCAATGACTCTGAAGGAAATGGTATGTAATCAACCTTTCGACAAAGCCAGACTGAAAGCTTTTCTTATCACATCTGTCTATGTTCTCATCTTGTCGACCTGTAGTGATCTACTCGGATTTGTATGGTCAGCTACAAGCTACTCTTTTGTTTTCAGGTACATTAACCATGATAAACTCTTAGCTTTATGGTGTTGTATAGCAAGTGCAGCACTGCTAACAATGTATTTGGCATGGAATGTGATATGGAATATGAGTATTGTGATCTCGATATTGGAGGGGATATATGGAACCAAGGCATTCGGTATAGTAACGTATCTAAGCACTGGCAACGAGTGTCGAGGCTTTCTTTTGATGCTGATTTTCGTTGCTGGGGAAGTAACATTCAGGCTGCCATGTCTCTATTTCGGCTGCAAAGAAAGGGGGAGTGGAATTCTCGTTGCGCAGAGTAGCTTGTTGTGCTTGGGGAATGCATTCAAGTTAGTTGTCTTCGTGATATATTTCCATGATTGCAAGAACCGGGTTATAGAGAAGAGGTTGATGATCAAGGCTAACAGAGCCGGTGATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.06

Weight (kDa)

8.38

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 858
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 1 cut(s) 512
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 2 cut(s) 192, 846
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 40, 288
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 320, 892
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 9 cut(s) 40, 68, 361, 476, 548, 555, 599, 867, 987
AluI AGCT 9 cut(s) 40, 68, 361, 476, 548, 555, 599, 867, 987
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 3 cut(s) 348, 407, 818
AlwI GGATC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 15, 623, 805, 825
ApoI RAATTY 2 cut(s) 192, 846
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp700I GAANNNNTTC 1 cut(s) 887
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 3 cut(s) 283, 284, 935
AsuHPI GGTGA 2 cut(s) 358, 989
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 97, 895
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 4 cut(s) 27, 635, 792, 812
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 2 cut(s) 957, 979
BcnI CCSGG 3 cut(s) 283, 284, 935
BcoDI GTCTC 3 cut(s) 348, 407, 818
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 517
BisI GCNGC 4 cut(s) 16, 624, 806, 826
BlsI GCNGC 4 cut(s) 17, 625, 807, 827
Bme1390I CCNGG 4 cut(s) 176, 283, 284, 935
Bme18I GGWCC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 4 cut(s) 176, 283, 284, 935
BmsI GCATC 2 cut(s) 211, 759
BpiI GAAGAC 2 cut(s) 97, 895
BpuMI CCSGG 3 cut(s) 283, 284, 935
BsaHI GRCGYC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 282, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 288
Bse118I RCCGGY 1 cut(s) 974
Bse1I ACTGG 1 cut(s) 745
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 282, 708
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 40, 288
BseNI ACTGG 1 cut(s) 745
BseXI GCAGC 4 cut(s) 27, 635, 792, 812
BseYI CCCAGC 2 cut(s) 40, 785
BsgI GTGCAG 1 cut(s) 642
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 4 cut(s) 206, 283, 934, 975
BslI CCNNNNNNNGG 2 cut(s) 40, 288
BsmAI GTCTC 3 cut(s) 348, 407, 818
BsmBI CGTCTC 1 cut(s) 407
BsmI GAATGC 3 cut(s) 713, 887, 889
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 5 cut(s) 178, 523, 678, 957, 979
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 706
BspPI GGATC 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 974
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 974
BssECI CCNNGG 2 cut(s) 282, 708
BssMI GATC 5 cut(s) 178, 523, 678, 957, 979
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 5 cut(s) 5, 137, 333, 405, 941
BstACI GRCGYC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 59, 595, 734
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 5 cut(s) 181, 526, 681, 960, 982
BstMAI GTCTC 3 cut(s) 348, 407, 818
BstMBI GATC 5 cut(s) 178, 523, 678, 957, 979
BstMWI GCNNNNNNNGC 3 cut(s) 623, 873, 971
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 4 cut(s) 174, 281, 282, 933
BstSFI CTRYAG 1 cut(s) 517
BstV1I GCAGC 4 cut(s) 27, 635, 792, 812
BstV2I GAAGAC 2 cut(s) 97, 895
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 2 cut(s) 626, 738
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 974
Cfr13I GGNCC 1 cut(s) 246
Cfr9I CCCGGG 1 cut(s) 282
CseI GACGC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 574
CviAII CATG 6 cut(s) 235, 370, 584, 648, 810, 920
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 3 cut(s) 59, 595, 734
DpnI GATC 5 cut(s) 180, 525, 680, 959, 981
DpnII GATC 5 cut(s) 178, 523, 678, 957, 979
Eam1104I CTCTTC 5 cut(s) 5, 137, 333, 405, 941
EarI CTCTTC 5 cut(s) 5, 137, 333, 405, 941
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 846
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 708
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 6 cut(s) 238, 373, 587, 651, 813, 923
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 544, 576
FatI CATG 6 cut(s) 234, 369, 583, 647, 809, 919
FbaI TGATCA 2 cut(s) 957, 979
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 4 cut(s) 16, 624, 806, 826
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 4 cut(s) 16, 624, 806, 826
FspBI CTAG 1 cut(s) 356
FspI TGCGCA 1 cut(s) 858
GlaI GCGC 1 cut(s) 858
GluI GCNGC 4 cut(s) 16, 624, 806, 826
GsaI CCCAGC 2 cut(s) 44, 789
HaeIII GGCC 1 cut(s) 209
HapII CCGG 4 cut(s) 206, 283, 934, 975
HgaI GACGC 1 cut(s) 424
HhaI GCGC 1 cut(s) 859
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 6 cut(s) 238, 373, 587, 651, 813, 923
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HincII GTYRAC 2 cut(s) 27, 513
HindII GTYRAC 2 cut(s) 27, 513
HindIII AAGCTT 2 cut(s) 66, 474
HinfI GANTC 2 cut(s) 316, 424
HpaII CCGG 4 cut(s) 206, 283, 934, 975
HphI GGTGA 2 cut(s) 358, 989
Hpy166II GTNNAC 3 cut(s) 27, 148, 513
Hpy188I TCNGA 3 cut(s) 429, 533, 984
Hpy188III TCNNGA 2 cut(s) 682, 907
Hpy8I GTNNAC 3 cut(s) 27, 148, 513
HpyAV CCTTC 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 728
HpyCH4V TGCA 6 cut(s) 166, 377, 623, 828, 887, 927
HpyF10VI GCNNNNNNNGC 3 cut(s) 623, 873, 971
HpyF3I CTNAG 3 cut(s) 59, 595, 734
HpySE526I ACGT 1 cut(s) 728
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 6 cut(s) 238, 373, 587, 651, 813, 923
HspAI GCGC 1 cut(s) 857
Ksp22I TGATCA 2 cut(s) 957, 979
Kzo9I GATC 5 cut(s) 178, 523, 678, 957, 979
LguI GCTCTTC 1 cut(s) 5
Lsp1109I GCAGC 4 cut(s) 27, 635, 792, 812
LweI GCATC 2 cut(s) 211, 759
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 3 cut(s) 277, 724, 793
MalI GATC 5 cut(s) 180, 525, 680, 959, 981
MboI GATC 5 cut(s) 178, 523, 678, 957, 979
MboII GAAGA 8 cut(s) 22, 97, 124, 320, 409, 422, 895, 958
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 5 cut(s) 192, 250, 378, 385, 846
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 6 cut(s) 138, 220, 403, 685, 749, 942
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 887
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 4 cut(s) 206, 283, 934, 975
MspR9I CCNGG 4 cut(s) 176, 283, 284, 935
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 3 cut(s) 713, 887, 889
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 623, 873, 971
NciI CCSGG 3 cut(s) 283, 284, 935
NdeII GATC 5 cut(s) 178, 523, 678, 957, 979
NlaIII CATG 6 cut(s) 238, 373, 587, 651, 813, 923
NlaIV GGNNCC 1 cut(s) 706
NsbI TGCGCA 1 cut(s) 858
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 1 cut(s) 238
PciI ACATGT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 5
PctI GAATGC 3 cut(s) 713, 887, 889
PdmI GAANNNNTTC 1 cut(s) 887
PfeI GAWTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 4 cut(s) 17, 625, 807, 827
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PscI ACATGT 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 2 cut(s) 40, 785
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 363
SalI GTCGAC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 4 cut(s) 16, 624, 806, 826
Sau3AI GATC 5 cut(s) 178, 523, 678, 957, 979
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 4 cut(s) 176, 283, 284, 935
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 211, 759
SfcI CTRYAG 1 cut(s) 517
SinI GGWCC 1 cut(s) 246
SmaI CCCGGG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 5 cut(s) 192, 250, 378, 385, 846
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 4 cut(s) 174, 281, 282, 933
StyI CCWWGG 1 cut(s) 708
TaiI ACGT 1 cut(s) 731
TaqI TCGA 5 cut(s) 395, 456, 512, 683, 754
TasI AATT 5 cut(s) 192, 250, 378, 385, 846
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 2 cut(s) 633, 745
TseI GCWGC 4 cut(s) 15, 623, 805, 825
TspDTI ATGAA 1 cut(s) 23
TspMI CCCGGG 1 cut(s) 282
TspRI CASTG 2 cut(s) 633, 745
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 2 cut(s) 192, 846
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 887
XspI CTAG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.