Rh4AG410200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000475
Physical Location & Seq
Reverse (-)
70977279 .. 70979682
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG410200.1

Sequence Viewer

Length: 1137 bp
ATGAAGAATCCTATAGAACTTGAGCAGATCAAGCCATGGTTTCTTGGCACCATTGGTATAATGGGATCAGCCATGAAAATCCTTTTGGGAAATCTCAATTTCATAACCTTCAATTTGATCACCTCCTTTCCTCTTTTCTGCATGATGAAGTTCATACCAAGATCACCTTATGACTTTTGGCAGCCTAGTTTCATCATGGAGGCATCATTGGAGCTAAGGCGGCTCATTACTCACCCTGGCACTCTGAAATCTTCTATACCTTCGATTCAAGATTGGACAATACGAGTACTCGATGCGTGGCTTTTTGACATGCTCAAGTTCCTCGTTGCACTCACATCTATCTACTCTGCTTCAATAATCTGTACTACTAGTGTTGGCAAGTCAATGAGTCTCCGATATCTTGTTCAGAGTTCCATCACCAAAATTTGGTGGCCTGAGCCTATAATTACATATTTTTCTCTGTCCCTAATTTCCTCCATCTTTTTAGAAGGTTTTAGACATTGGTTAAGGGCAAGGCCTACAAATCTGTACCTGATCATCCTACAATTTTTCGTTCCATTTGTGGCCGTTGCCAAATGGTTGGAGTTCAAAGCCTTGATGAATGTAGCTGTTGTTGTTTCCGTTTTAGAAGACAATATCAGAGGGCCTTTTGAAGCCTACTCAACCTCGTCGGAGCTAAGCAGAGGAAATAGACTAAGAGGGTTGGTTTTGATAATTCTCCATTCTAGTGTGCTCTCAGATGTTCTTCGACTACCTCATCCGTACATCCACTCTGAATGGCTCATACCAATTGGTATCATCAAAAAATTGAACCAAGACTTTCCTGATGGGTTGATTCAACTAGTCCTTCTCTATCTGGTGCCTCTCCATCTCCTAGAGCTCGGCACTGTGCTAGTGACTGTCGATTTGGCATCACGGATATACAAAGAAGAGAAACATTTGAGTCTCAAGGAAATGGCTTGTCCTATAGACTTGTACTCTATTCGTATCGACACGATTAGCAACAACCTATTATGTTGCATCCAGCATATCATGTCATGTCAAGAATTCCAGTTGTACTATCATAGCTCAGTTTCATCCGATATGGACTATGAATTAAGAAGTTGGAATCATCGAGTCAGTAAACAAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.63

Weight (kDa)

8.79

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 47, 859
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 2 cut(s) 423, 1046
AfaI GTAC 6 cut(s) 288, 364, 530, 764, 977, 1058
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 7 cut(s) 112, 269, 354, 589, 653, 811, 839
AhlI ACTAGT 2 cut(s) 368, 841
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 214, 608, 676, 880, 1068
AluI AGCT 5 cut(s) 214, 608, 676, 880, 1068
Alw21I GWGCWC 2 cut(s) 735, 882
Alw26I GTCTC 2 cut(s) 395, 950
AlwI GGATC 1 cut(s) 73
AoxI GGCC 4 cut(s) 431, 515, 564, 644
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 423, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 4 cut(s) 112, 156, 224, 409
BanI GGYRCC 2 cut(s) 47, 859
BanII GRGCYC 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 2 cut(s) 735, 882
BbvI GCAGC 1 cut(s) 193
BccI CCATC 4 cut(s) 422, 485, 821, 876
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 237
BclI TGATCA 2 cut(s) 117, 534
BcoDI GTCTC 2 cut(s) 395, 950
BcuI ACTAGT 2 cut(s) 368, 841
BfaI CTAG 6 cut(s) 186, 369, 726, 842, 875, 893
BfmI CTRYAG 2 cut(s) 12, 966
BisI GCNGC 2 cut(s) 182, 221
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 2 cut(s) 183, 222
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 49, 861
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 4 cut(s) 212, 283, 920, 1029
BpiI GAAGAC 1 cut(s) 636
Bpu10I CCTNAGC 2 cut(s) 215, 435
Bpu1102I GCTNAGC 1 cut(s) 677
BpuEI CTTGAG 3 cut(s) 41, 299, 932
BsaJI CCNNGG 2 cut(s) 35, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 1051
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 35, 235
BseGI GGATG 5 cut(s) 537, 757, 765, 1020, 1076
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMII CTCAG 3 cut(s) 426, 750, 1083
BseNI ACTGG 1 cut(s) 1051
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 4 cut(s) 433, 517, 566, 646
BshNI GGYRCC 2 cut(s) 47, 859
BsiHKAI GWGCWC 2 cut(s) 735, 882
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 2 cut(s) 395, 950
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 4 cut(s) 433, 517, 566, 646
Bsp1286I GDGCHC 2 cut(s) 735, 882
Bsp143I GATC 5 cut(s) 27, 65, 117, 161, 534
Bsp1720I GCTNAGC 1 cut(s) 677
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 220
BspANI GGCC 4 cut(s) 433, 517, 566, 646
BspCNI CTCAG 3 cut(s) 427, 749, 1082
BspLI GGNNCC 2 cut(s) 49, 861
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 47, 859
BsrI ACTGG 1 cut(s) 1051
BssECI CCNNGG 2 cut(s) 35, 235
BssMI GATC 5 cut(s) 27, 65, 117, 161, 534
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 889, 901
Bst6I CTCTTC 1 cut(s) 924
BstDEI CTNAG 6 cut(s) 215, 435, 677, 695, 736, 1069
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 5 cut(s) 537, 757, 765, 1020, 1076
BstKTI GATC 5 cut(s) 30, 68, 120, 164, 537
BstMAI GTCTC 2 cut(s) 395, 950
BstMBI GATC 5 cut(s) 27, 65, 117, 161, 534
BstMWI GCNNNNNNNGC 2 cut(s) 31, 220
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 2 cut(s) 12, 966
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 636
BstXI CCANNNNNNTGG 1 cut(s) 580
BsuRI GGCC 4 cut(s) 433, 517, 566, 646
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 5 cut(s) 537, 757, 765, 1020, 1076
BtsIMutI CAGTG 1 cut(s) 885
Cfr13I GGNCC 1 cut(s) 644
Csp6I GTAC 6 cut(s) 287, 363, 529, 763, 976, 1057
CviAII CATG 7 cut(s) 36, 73, 142, 196, 310, 1033, 1038
CviQI GTAC 6 cut(s) 287, 363, 529, 763, 976, 1057
DdeI CTNAG 6 cut(s) 215, 435, 677, 695, 736, 1069
DpnI GATC 5 cut(s) 29, 67, 119, 163, 536
DpnII GATC 5 cut(s) 27, 65, 117, 161, 534
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 882
Eco32I GATATC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 880
EcoICRI GAGCTC 1 cut(s) 880
EcoO109I RGGNCCY 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 7 cut(s) 39, 76, 145, 199, 313, 1036, 1041
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 448
FatI CATG 7 cut(s) 35, 72, 141, 195, 309, 1032, 1037
FbaI TGATCA 2 cut(s) 117, 534
Fnu4HI GCNGC 2 cut(s) 182, 221
FokI GGATG 5 cut(s) 524, 744, 752, 1007, 1063
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 2 cut(s) 182, 221
FspBI CTAG 6 cut(s) 186, 369, 726, 842, 875, 893
GluI GCNGC 2 cut(s) 182, 221
HaeIII GGCC 4 cut(s) 433, 517, 566, 646
Hin1II CATG 7 cut(s) 39, 76, 145, 199, 313, 1036, 1041
HinfI GANTC 7 cut(s) 7, 265, 388, 835, 943, 1108, 1116
HphI GGTGA 4 cut(s) 112, 156, 224, 409
Hpy166II GTNNAC 1 cut(s) 1124
Hpy188I TCNGA 8 cut(s) 246, 395, 408, 641, 673, 739, 775, 1081
Hpy188III TCNNGA 3 cut(s) 269, 824, 1043
Hpy8I GTNNAC 1 cut(s) 1124
Hpy99I CGWCG 1 cut(s) 673
HpyAV CCTTC 4 cut(s) 118, 270, 482, 857
HpyCH4III ACNGT 2 cut(s) 889, 901
HpyCH4V TGCA 3 cut(s) 141, 329, 1020
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 220
HpyF3I CTNAG 6 cut(s) 215, 435, 677, 695, 736, 1069
Hsp92II CATG 7 cut(s) 39, 76, 145, 199, 313, 1036, 1041
Ksp22I TGATCA 2 cut(s) 117, 534
Kzo9I GATC 5 cut(s) 27, 65, 117, 161, 534
LmnI GCTCC 2 cut(s) 211, 673
LpnPI CCDG 8 cut(s) 222, 249, 447, 545, 837, 842, 1037, 1064
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 4 cut(s) 212, 283, 920, 1029
MaeI CTAG 6 cut(s) 186, 369, 726, 842, 875, 893
MaeIII GTNAC 1 cut(s) 895
MalI GATC 5 cut(s) 29, 67, 119, 163, 536
MboI GATC 5 cut(s) 27, 65, 117, 161, 534
MboII GAAGA 5 cut(s) 16, 243, 641, 737, 941
MfeI CAATTG 1 cut(s) 789
MhlI GDGCHC 2 cut(s) 735, 882
MlyI GAGTC 3 cut(s) 397, 952, 1125
MmeI TCCRAC 3 cut(s) 561, 651, 1085
MseI TTAA 2 cut(s) 506, 1097
MslI CAYNNNNRTG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 31, 220
NcoI CCATGG 1 cut(s) 35
NdeII GATC 5 cut(s) 27, 65, 117, 161, 534
NlaIII CATG 7 cut(s) 39, 76, 145, 199, 313, 1036, 1041
NlaIV GGNNCC 2 cut(s) 49, 861
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 895
NspI RCATGY 1 cut(s) 313
PceI AGGCCT 1 cut(s) 517
PfeI GAWTC 4 cut(s) 7, 265, 835, 1108
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 2 cut(s) 183, 222
PleI GAGTC 3 cut(s) 396, 951, 1124
PpsI GAGTC 3 cut(s) 396, 951, 1124
Psp124BI GAGCTC 1 cut(s) 882
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 49, 861
PspPI GGNCC 1 cut(s) 644
RsaI GTAC 6 cut(s) 288, 364, 530, 764, 977, 1058
RsaNI GTAC 6 cut(s) 287, 363, 529, 763, 976, 1057
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 506, 1097
SatI GCNGC 2 cut(s) 182, 221
Sau3AI GATC 5 cut(s) 27, 65, 117, 161, 534
Sau96I GGNCC 1 cut(s) 644
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 3 cut(s) 397, 952, 1125
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 2 cut(s) 735, 882
SfaNI GCATC 4 cut(s) 212, 283, 920, 1029
SfcI CTRYAG 2 cut(s) 12, 966
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 3 cut(s) 20, 314, 947
SmoI CTYRAG 3 cut(s) 20, 314, 947
SpeI ACTAGT 2 cut(s) 368, 841
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 1 cut(s) 220
SspMI CTAG 6 cut(s) 186, 369, 726, 842, 875, 893
SstI GAGCTC 1 cut(s) 882
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 889, 901
TaqI TCGA 6 cut(s) 263, 291, 748, 903, 990, 1114
TatI WGTACW 4 cut(s) 286, 362, 975, 1056
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 4 cut(s) 7, 265, 835, 1108
Tru1I TTAA 2 cut(s) 506, 1097
Tru9I TTAA 2 cut(s) 506, 1097
TscAI CASTG 1 cut(s) 892
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 9 cut(s) 17, 89, 91, 142, 161, 181, 614, 1065, 1107
TspGWI ACGGA 3 cut(s) 610, 750, 931
TspRI CASTG 1 cut(s) 892
Van91I CCANNNNNTGG 1 cut(s) 426
XapI RAATTY 2 cut(s) 423, 1046
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 6 cut(s) 186, 369, 726, 842, 875, 893
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.