FvH4_4g34760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32342780 .. 32343628
849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34760.t1

Sequence Viewer

Length: 849 bp
ATGGAGAAGAAGCCTAGGTTTCTCGGCGTCTTTGGTATAATCAGAGCAGCCATCGGTATCCCTTTTATGAATCCCAGTTTCATTGCCTATACATGTATCACCTTCCTTCCTCTTTTTTGCGTAGTTATATTACCAAAATTGTCATTCGTGCCTAGTTTAATCAGAGAGGCAATTGTTCTACTAGACCTGCCTGATTACCGCTCCCAAAAAAGGCCAATATCTCTTCCCTTTATTAACCTATCTGAACTGTTCAAGTTCTTAGCTGCAGTTACAGTTATTGATTCTGCTTCAACAATATATAAGGGCGGAGCTGGGAGGTCAATAGGTCTCCGAGATCTTCTTCGAAACTCCAGCATCAGAAGAAGGTGGCGGAATCCTATTTTTGCATACATAATCATGTCCTGGATCTCAACGTTGTCTTTGGATGCTGTTCGTCTTTATGGTACTGCAGGTCCTTTTAGCTCATTAAGAAACGAGTGGTCACCACCTCTACATTTCTTCACTCTGCTTGGGTTCACCTTCATGCGCGACGAGTTCAGCGCCTGGTGGCAACTTGCTCTGGTTGTTTCTGTTTTGGAGGAGGACAAGTTACAGCTTGATGCATTTTTGGCCTCATGGAAGATGAGAAAAGGAAACAGATTCACAGGGTTTGTTCTGATGGTTCTCTACTTTGGTTGGCATTGCTTGCTGTTAGTACTGAACAGTTTCACTAGTGGCGTTGGATATGCTTGTGTCGACGGAGGCTTGTTCTGTTTGGGGACAATTATGAACTGGGTTGCTTGCACAGTTTATTACCATGATTGCAAGAATCGCCAAAGACCGGAGGAGGTTCTTGCCAGGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.16

Weight (kDa)

9.31

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 195, 440
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 735
AccII CGCG 1 cut(s) 528
AciI CCGC 3 cut(s) 199, 306, 370
AclI AACGTT 1 cut(s) 413
AclWI GGATC 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 2 cut(s) 445, 696
AfiI CCNNNNNNNGG 2 cut(s) 210, 820
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 2 cut(s) 253, 291
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 3 cut(s) 401, 542, 836
AluBI AGCT 4 cut(s) 263, 311, 462, 595
AluI AGCT 4 cut(s) 263, 311, 462, 595
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 543
AoxI GGCC 2 cut(s) 212, 609
ApeKI GCWGC 2 cut(s) 47, 263
Asp700I GAANNNNTTC 1 cut(s) 704
AspA2I CCTAGG 1 cut(s) 14
AspLEI GCGC 2 cut(s) 528, 542
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 91, 474, 508
AsuII TTCGAA 1 cut(s) 343
AvaII GGWCC 1 cut(s) 452
AvrII CCTAGG 1 cut(s) 14
BbvI GCAGC 2 cut(s) 59, 250
BccI CCATC 2 cut(s) 59, 652
BciT130I CCWGG 3 cut(s) 403, 544, 838
BciVI GTATCC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 332
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 4 cut(s) 15, 153, 182, 711
BfmI CTRYAG 2 cut(s) 264, 447
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 2 cut(s) 195, 440
BfuI GTATCC 1 cut(s) 68
BglII AGATCT 1 cut(s) 334
BisI GCNGC 2 cut(s) 48, 264
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 2 cut(s) 49, 265
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 3 cut(s) 403, 544, 838
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 3 cut(s) 403, 544, 838
BmrI ACTGGG 2 cut(s) 69, 781
BmsI GCATC 3 cut(s) 363, 415, 589
BmuI ACTGGG 2 cut(s) 69, 781
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 14, 837
BsaWI WCCGGW 1 cut(s) 820
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 820
Bse1I ACTGG 2 cut(s) 75, 776
Bse3DI GCAATG 2 cut(s) 81, 679
BseBI CCWGG 3 cut(s) 403, 544, 838
BseDI CCNNGG 2 cut(s) 14, 837
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 210, 820
BseMI GCAATG 2 cut(s) 81, 679
BseNI ACTGG 2 cut(s) 75, 776
BseRI GAGGAG 2 cut(s) 593, 839
BseXI GCAGC 2 cut(s) 59, 250
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 214, 611
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 2 cut(s) 210, 820
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 772
BsnI GGCC 2 cut(s) 214, 611
Bso31I GGTCTC 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 343
Bsp143I GATC 2 cut(s) 334, 405
BspACI CCGC 3 cut(s) 199, 306, 370
BspANI GGCC 2 cut(s) 214, 611
BspFNI CGCG 1 cut(s) 528
BspMAI CTGCAG 2 cut(s) 268, 451
BspMI ACCTGC 2 cut(s) 195, 440
BspPI GGATC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 2 cut(s) 81, 679
BsrI ACTGG 2 cut(s) 75, 776
BssECI CCNNGG 2 cut(s) 14, 837
BssMI GATC 2 cut(s) 334, 405
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 3 cut(s) 403, 544, 838
Bst4CI ACNGT 4 cut(s) 249, 274, 704, 787
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 685
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 686, 781
BstDEI CTNAG 1 cut(s) 259
BstEII GGTNACC 1 cut(s) 480
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 2 cut(s) 528, 542
BstKTI GATC 2 cut(s) 337, 408
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 334, 405
BstMWI GCNNNNNNNGC 3 cut(s) 608, 685, 810
BstNI CCWGG 3 cut(s) 403, 544, 838
BstNSI RCATGY 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 401, 542, 836
BstSFI CTRYAG 2 cut(s) 264, 447
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 59, 250
BstX2I RGATCY 2 cut(s) 334, 405
BstYI RGATCY 2 cut(s) 334, 405
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 2 cut(s) 214, 611
BtsCI GGATG 1 cut(s) 430
BveI ACCTGC 2 cut(s) 195, 440
Cac8I GCNNGC 2 cut(s) 686, 781
CaiI CAGNNNCTG 1 cut(s) 543
CfoI GCGC 2 cut(s) 528, 542
Cfr13I GGNCC 1 cut(s) 452
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 444, 695
CviAII CATG 5 cut(s) 93, 397, 523, 615, 797
CviJI RGCY 9 cut(s) 13, 50, 214, 263, 311, 462, 595, 611, 744
CviKI_1 RGCY 9 cut(s) 13, 50, 214, 263, 311, 462, 595, 611, 744
CviQI GTAC 2 cut(s) 444, 695
DdeI CTNAG 1 cut(s) 259
DpnI GATC 2 cut(s) 336, 407
DpnII GATC 2 cut(s) 334, 405
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EciI GGCGGA 2 cut(s) 321, 385
Eco130I CCWWGG 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 452
Eco91I GGTNACC 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 480
EcoRII CCWGG 3 cut(s) 401, 542, 836
EcoT14I CCWWGG 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 5 cut(s) 96, 400, 526, 618, 800
FaqI GGGAC 1 cut(s) 772
FatI CATG 5 cut(s) 92, 396, 522, 614, 796
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 2 cut(s) 48, 264
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 2 cut(s) 48, 264
FspBI CTAG 4 cut(s) 15, 153, 182, 711
GlaI GCGC 2 cut(s) 527, 541
GluI GCNGC 2 cut(s) 48, 264
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 214, 611
HapII CCGG 1 cut(s) 821
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 528, 542
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 5 cut(s) 96, 400, 526, 618, 800
Hin6I GCGC 2 cut(s) 526, 540
HinP1I GCGC 2 cut(s) 526, 540
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 5 cut(s) 70, 281, 373, 639, 808
HpaII CCGG 1 cut(s) 821
HphI GGTGA 3 cut(s) 91, 474, 508
Hpy166II GTNNAC 2 cut(s) 516, 736
Hpy188I TCNGA 6 cut(s) 44, 164, 244, 332, 359, 657
Hpy8I GTNNAC 2 cut(s) 516, 736
Hpy99I CGWCG 2 cut(s) 533, 740
HpyAV CCTTC 4 cut(s) 112, 116, 357, 529
HpyCH4III ACNGT 4 cut(s) 249, 274, 704, 787
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 6 cut(s) 266, 386, 449, 602, 783, 804
HpyF10VI GCNNNNNNNGC 3 cut(s) 608, 685, 810
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 5 cut(s) 96, 400, 526, 618, 800
HspAI GCGC 2 cut(s) 526, 540
Kzo9I GATC 2 cut(s) 334, 405
LmnI GCTCC 2 cut(s) 206, 308
Lsp1109I GCAGC 2 cut(s) 59, 250
LweI GCATC 3 cut(s) 363, 415, 589
MaeI CTAG 4 cut(s) 15, 153, 182, 711
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 3 cut(s) 268, 480, 588
MalI GATC 2 cut(s) 336, 407
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 334, 405
MboII GAAGA 7 cut(s) 19, 215, 329, 332, 372, 490, 631
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 334, 405
MluCI AATT 3 cut(s) 137, 171, 762
MmeI TCCRAC 1 cut(s) 700
Mph1103I ATGCAT 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 3 cut(s) 158, 234, 467
MslI CAYNNNNRTG 2 cut(s) 395, 521
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 3 cut(s) 403, 544, 838
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 3 cut(s) 403, 544, 838
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 3 cut(s) 608, 685, 810
NdeII GATC 2 cut(s) 334, 405
NlaIII CATG 5 cut(s) 96, 400, 526, 618, 800
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 96
NspV TTCGAA 1 cut(s) 343
PciI ACATGT 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 5 cut(s) 70, 281, 373, 639, 808
PfoI TCCNGGA 1 cut(s) 401
PkrI GCNGC 2 cut(s) 49, 265
PpuMI RGGWCCY 1 cut(s) 452
PscI ACATGT 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 401, 542, 836
PspEI GGTNACC 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 3 cut(s) 401, 542, 836
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 2 cut(s) 268, 451
PstNI CAGNNNCTG 1 cut(s) 543
PsuI RGATCY 2 cut(s) 334, 405
RsaI GTAC 2 cut(s) 445, 696
RsaNI GTAC 2 cut(s) 444, 695
RseI CAYNNNNRTG 2 cut(s) 395, 521
SalI GTCGAC 1 cut(s) 734
SaqAI TTAA 3 cut(s) 158, 234, 467
SatI GCNGC 2 cut(s) 48, 264
Sau3AI GATC 2 cut(s) 334, 405
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 696
ScrFI CCNGG 3 cut(s) 403, 544, 838
SfaNI GCATC 3 cut(s) 363, 415, 589
SfcI CTRYAG 2 cut(s) 264, 447
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 2 cut(s) 395, 521
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 3 cut(s) 137, 171, 762
SsiI CCGC 3 cut(s) 199, 306, 370
SspMI CTAG 4 cut(s) 15, 153, 182, 711
StyD4I CCNGG 3 cut(s) 401, 542, 836
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 4 cut(s) 249, 274, 704, 787
TaiI ACGT 1 cut(s) 416
TaqI TCGA 2 cut(s) 343, 735
TasI AATT 3 cut(s) 137, 171, 762
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 5 cut(s) 70, 281, 373, 639, 808
Tru1I TTAA 3 cut(s) 158, 234, 467
Tru9I TTAA 3 cut(s) 158, 234, 467
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 2 cut(s) 47, 263
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 4 cut(s) 70, 83, 511, 782
TspGWI ACGGA 1 cut(s) 753
VpaK11BI GGWCC 1 cut(s) 452
XceI RCATGY 1 cut(s) 96
XmaJI CCTAGG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 4 cut(s) 15, 153, 182, 711
ZrmI AGTACT 1 cut(s) 696
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.