FvH4_4g34710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32329058 .. 32330455
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34710.t1

Sequence Viewer

Length: 945 bp
ATGGAAAGCAACCATATCATGTTGAAGCCAAAGATTGGAGTTTTTGATATACTTAAAGAATCTCTGTATTTAATCTGCAAGAGCCACACCTTCATTATACTCACCTTTCTCACATCTCTACCCTTTTTTTGTTTCTCAATTTACTATGAGTTGCACCTGCAAAGAACCCTTGTTCAAATCCTGCAGTTTCTGAAACAAAATTCTGATTTTTTCAACTACAATTGGCAAACACAGCTCCATACTACAACAAGTTGGACCCAGATGTTATCCAACAACTTGATACAACTGGGACTTCTTTATCTGATACCTCTCCATCTCCTAGAGCATTGCAGTGCTTTTGTGATCGTCGATTTGGCCTCCAAGTTAGAAGGAAAAGGGAAGTTCAGGGAGGTCTCCGGCAGTGACAGTGTTACCAGAGCGGTGCGCTTTAGAGGAACTCTTGTCACATCCATCTGGGTACTTTTCTTATCAACTTGTACTGTACTTGGATCAATATGGTTAGTATCAGTATACTATGTTCTATTGAGAAATATTGGGTACTATAATATGTACTGTAGAATGTTATACAAGGCAGCTTGCATGGCACTGCTAGCAAATTACTTGGAATGGGGTGCTATATGGAACATGAGTATTGTGATCTCAATACTGGAGAACACAAAGGGGGCTAATGCATTGACGCTCTCAGCCTATCTAAGCAGAGGTAGAGAACGGCGGCAAGGGCTTGTTTTGACACTTATTTTCGGTGTTTGGGGAATCGGTTTGAAGCTGACATGCCTCTTCTTCAAACACTATGAAAGAAGAGGAGGAATTGTTGCTCAGATTGGCCTCATATGTACTGGCAATGTGGTGAAGTGGGTTGCATACATGATTTATTACCAATACTGCAAAAAACTGATTTCAGAGAAGAGAGTTGATGTGGAAATCGGACAAGTAGTTGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

36.21

Weight (kDa)

9.31

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 419
AccI GTMKAC 1 cut(s) 510
AciI CCGC 2 cut(s) 419, 712
AclWI GGATC 1 cut(s) 496
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 6 cut(s) 459, 478, 483, 539, 551, 835
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 5 cut(s) 25, 176, 214, 763, 784
AluBI AGCT 3 cut(s) 235, 575, 766
AluI AGCT 3 cut(s) 235, 575, 766
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 2 cut(s) 354, 823
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 1 cut(s) 199
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 94, 859
AsuNHI GCTAGC 1 cut(s) 589
AvaII GGWCC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 584
BccI CCATC 2 cut(s) 321, 458
BceAI ACGGC 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 320, 590
BfmI CTRYAG 2 cut(s) 182, 553
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 573, 713
BlsI GCNGC 2 cut(s) 574, 714
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 296
BmtI GCTAGC 1 cut(s) 593
BmuI ACTGGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 3 cut(s) 291, 651, 841
Bse3DI GCAATG 2 cut(s) 325, 847
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 325, 847
BseMII CTCAG 2 cut(s) 696, 830
BseNI ACTGG 3 cut(s) 291, 651, 841
BseRI GAGGAG 1 cut(s) 816
BseXI GCAGC 1 cut(s) 584
BshFI GGCC 2 cut(s) 356, 825
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 2 cut(s) 356, 825
Bso31I GGTCTC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 342, 488, 636
BspACI CCGC 2 cut(s) 419, 712
BspANI GGCC 2 cut(s) 356, 825
BspCNI CTCAG 2 cut(s) 695, 829
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 593
BspPI GGATC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 325, 847
BsrI ACTGG 3 cut(s) 291, 651, 841
BssMI GATC 3 cut(s) 342, 488, 636
BssNAI GTATAC 1 cut(s) 511
Bst1107I GTATAC 1 cut(s) 511
Bst4CI ACNGT 3 cut(s) 407, 481, 554
Bst6I CTCTTC 3 cut(s) 782, 793, 899
BstC8I GCNNGC 2 cut(s) 577, 591
BstDEI CTNAG 3 cut(s) 682, 692, 816
BstF5I GGATG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 3 cut(s) 345, 491, 639
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 342, 488, 636
BstMWI GCNNNNNNNGC 4 cut(s) 232, 581, 590, 718
BstNSI RCATGY 1 cut(s) 774
BstSFI CTRYAG 2 cut(s) 182, 553
BstV1I GCAGC 1 cut(s) 584
BstZ17I GTATAC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 356, 825
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 3 cut(s) 337, 406, 584
BtsIMutI CAGTG 4 cut(s) 337, 406, 412, 584
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 577, 591
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 685
Csp6I GTAC 6 cut(s) 458, 477, 482, 538, 550, 834
CviAII CATG 5 cut(s) 19, 580, 625, 771, 865
CviQI GTAC 6 cut(s) 458, 477, 482, 538, 550, 834
DdeI CTNAG 3 cut(s) 682, 692, 816
DpnI GATC 3 cut(s) 344, 490, 638
DpnII GATC 3 cut(s) 342, 488, 636
Eam1104I CTCTTC 3 cut(s) 782, 793, 899
EarI CTCTTC 3 cut(s) 782, 793, 899
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 673
FaeI CATG 5 cut(s) 22, 583, 628, 774, 868
FaqI GGGAC 1 cut(s) 303
FatI CATG 5 cut(s) 18, 579, 624, 770, 864
FauNDI CATATG 1 cut(s) 830
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 2 cut(s) 573, 713
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 2 cut(s) 573, 713
FspBI CTAG 2 cut(s) 320, 590
GlaI GCGC 1 cut(s) 425
GluI GCNGC 2 cut(s) 573, 713
GsuI CTGGAG 1 cut(s) 668
HaeIII GGCC 2 cut(s) 356, 825
HapII CCGG 1 cut(s) 396
HgaI GACGC 1 cut(s) 685
HhaI GCGC 1 cut(s) 426
Hin1II CATG 5 cut(s) 22, 583, 628, 774, 868
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 2 cut(s) 59, 753
HpaII CCGG 1 cut(s) 396
HphI GGTGA 2 cut(s) 94, 859
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 6 cut(s) 192, 205, 303, 819, 901, 926
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 100, 362
HpyCH4III ACNGT 3 cut(s) 407, 481, 554
HpyCH4V TGCA 9 cut(s) 78, 154, 160, 184, 330, 579, 671, 860, 885
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 581, 590, 718
HpyF3I CTNAG 3 cut(s) 682, 692, 816
Hsp92II CATG 5 cut(s) 22, 583, 628, 774, 868
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 342, 488, 636
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 1 cut(s) 584
MaeI CTAG 2 cut(s) 320, 590
MaeIII GTNAC 3 cut(s) 401, 409, 442
MalI GATC 3 cut(s) 344, 490, 638
MbiI CCGCTC 1 cut(s) 419
MboI GATC 3 cut(s) 342, 488, 636
MboII GAAGA 4 cut(s) 769, 772, 810, 916
MfeI CAATTG 1 cut(s) 220
MluCI AATT 5 cut(s) 138, 199, 220, 595, 807
MmeI TCCRAC 2 cut(s) 233, 294
MnlI CCTC 9 cut(s) 318, 367, 382, 425, 692, 785, 794, 797, 836
Mph1103I ATGCAT 1 cut(s) 673
MseI TTAA 2 cut(s) 54, 71
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 396
MunI CAATTG 1 cut(s) 220
MwoI GCNNNNNNNGC 4 cut(s) 232, 581, 590, 718
NdeI CATATG 1 cut(s) 830
NdeII GATC 3 cut(s) 342, 488, 636
NheI GCTAGC 1 cut(s) 589
NlaIII CATG 5 cut(s) 22, 583, 628, 774, 868
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 401, 442
NsiI ATGCAT 1 cut(s) 673
NspI RCATGY 1 cut(s) 774
PaqCI CACCTGC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 59, 753
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 2 cut(s) 574, 714
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 255
PsrI GAACNNNNNNTAC 2 cut(s) 501, 533
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 6 cut(s) 459, 478, 483, 539, 551, 835
RsaNI GTAC 6 cut(s) 458, 477, 482, 538, 550, 834
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 2 cut(s) 54, 71
SatI GCNGC 2 cut(s) 573, 713
Sau3AI GATC 3 cut(s) 342, 488, 636
Sau96I GGNCC 1 cut(s) 255
SetI ASST 9 cut(s) 92, 107, 159, 237, 310, 393, 577, 703, 768
SfcI CTRYAG 2 cut(s) 182, 553
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 5 cut(s) 138, 199, 220, 595, 807
SsiI CCGC 2 cut(s) 419, 712
SspI AATATT 1 cut(s) 532
SspMI CTAG 2 cut(s) 320, 590
TaaI ACNGT 3 cut(s) 407, 481, 554
TaqI TCGA 1 cut(s) 348
TasI AATT 5 cut(s) 138, 199, 220, 595, 807
TatI WGTACW 4 cut(s) 476, 481, 549, 833
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 2 cut(s) 59, 753
Tru1I TTAA 2 cut(s) 54, 71
Tru9I TTAA 2 cut(s) 54, 71
TscAI CASTG 4 cut(s) 337, 406, 412, 591
TseFI GTSAC 2 cut(s) 401, 442
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 2 cut(s) 401, 442
TspDTI ATGAA 2 cut(s) 82, 807
TspRI CASTG 4 cut(s) 337, 406, 412, 591
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 2 cut(s) 320, 590
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.