Rh4DG417100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000475
Physical Location & Seq
Reverse (-)
62605216 .. 62605416
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG417100.1

Sequence Viewer

Length: 201 bp
ATGCTTCTCTATTTTGGTTGGCGTTCAAGGATCCTCTTCGAGTTGGAGGGATGGAGTTTTACTAGTGGAGTTGCCTATGCTTTTGTTGACAAAGGCTTGTTCTGTCTGGGGAGGGTTATGAATTGGGTTGCTTGCACGGTTTATTACCATGGTTGCAAGAATCGCCAAGGACAGGAGGAGGTTCTTGCCAAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

6.54

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 25, 38
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 27
AhlI ACTAGT 1 cut(s) 62
AlwI GGATC 2 cut(s) 25, 38
BamHI GGATCC 1 cut(s) 30
BccI CCATC 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 148, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 148, 166
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 172
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 25, 38
BssECI CCNNGG 2 cut(s) 148, 166
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 148, 166
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 133
CviAII CATG 1 cut(s) 149
CviJI RGCY 1 cut(s) 96
CviKI_1 RGCY 1 cut(s) 96
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 148, 166
EcoT14I CCWWGG 2 cut(s) 148, 166
ErhI CCWWGG 2 cut(s) 148, 166
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 78, 119, 150
FatI CATG 1 cut(s) 148
FokI GGATG 1 cut(s) 63
FspBI CTAG 1 cut(s) 63
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 135, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 92, 158
MaeI CTAG 1 cut(s) 63
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 30
MluCI AATT 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 5 cut(s) 40, 44, 105, 169, 172
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 148
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 30
Sau3AI GATC 1 cut(s) 30
SetI ASST 1 cut(s) 183
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 1 cut(s) 121
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 148, 166
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 134
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.