Rh4AG410500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000475
Physical Location & Seq
Reverse (-)
70989717 .. 70990096
380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG410500.1

Sequence Viewer

Length: 267 bp
ATGAGTGGGCGCCGCCTCTACATTTCTTCACTCAGGTTGGGGTCTCTTTCGTGCACCACTAGTACAGGGCGTGGTGGCAAGTGGCTCTTTTTGCCGAATCTCCTGAGGTCGGAGAGATGGAGTTTTACTAGTGGAGTTGCATATGCTTTAGTTGACAGAGGCTTGTTCTGTTTAGGGCACGTTATGAATTGGGTTGCTTGCACGATTTATTACCATGATTGCAAGAATCGCCAGAGACGGGAGGAGGTTGTTGCCAAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.09

Weight (kDa)

9.55

Isoelectric Point (pI)

76.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AciI CCGC 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 109, 238
AhlI ACTAGT 2 cut(s) 59, 128
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 48, 229
Alw44I GTGCAC 1 cut(s) 52
ApaLI GTGCAC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 12
AxyI CCTNAGG 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 56, 180
BanI GGYRCC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 48, 229
BcuI ACTAGT 2 cut(s) 59, 128
BfaI CTAG 2 cut(s) 60, 129
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 238
Bse21I CCTNAGG 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 109, 238
BseMII CTCAG 2 cut(s) 46, 95
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 2 cut(s) 56, 180
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 109, 238
BsmAI GTCTC 2 cut(s) 48, 229
BsmBI CGTCTC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 56, 180
BspACI CCGC 1 cut(s) 13
BspCNI CTCAG 2 cut(s) 45, 96
BspLI GGNNCC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 32, 104
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 48, 229
BstMWI GCNNNNNNNGC 2 cut(s) 91, 228
BstSLI GKGCMC 2 cut(s) 56, 180
Bsu36I CCTNAGG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 215
CviJI RGCY 2 cut(s) 85, 162
CviKI_1 RGCY 2 cut(s) 85, 162
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 32, 104
DinI GGCGCC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 1 cut(s) 218
FaiI YATR 4 cut(s) 142, 144, 185, 216
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 1 cut(s) 214
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 2 cut(s) 60, 129
GlaI GCGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 13
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 97, 226
Hpy166II GTNNAC 2 cut(s) 54, 154
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 54, 154
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 54, 140, 201, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 228
HpyF3I CTNAG 2 cut(s) 32, 104
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 10
KasI GGCGCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 19, 51, 116, 245
MaeI CTAG 2 cut(s) 60, 129
MaeII ACGT 1 cut(s) 180
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 56, 180
MluCI AATT 1 cut(s) 187
Mly113I GGCGCC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 5 cut(s) 26, 99, 152, 235, 238
MwoI GCNNNNNNNGC 2 cut(s) 91, 228
NarI GGCGCC 1 cut(s) 10
NdeI CATATG 1 cut(s) 142
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 97, 226
PkrI GCNGC 1 cut(s) 14
PluTI GGCGCC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SatI GCNGC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 56, 180
SetI ASST 4 cut(s) 38, 110, 183, 249
SfoI GGCGCC 1 cut(s) 11
SpeI ACTAGT 2 cut(s) 59, 128
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 13
SspDI GGCGCC 1 cut(s) 9
SspMI CTAG 2 cut(s) 60, 129
TaiI ACGT 1 cut(s) 183
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 97, 226
TspDTI ATGAA 1 cut(s) 200
VneI GTGCAC 1 cut(s) 52
XspI CTAG 2 cut(s) 60, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.