FvH4_4g34740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32336892 .. 32338380
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34740.t1

Sequence Viewer

Length: 978 bp
ATGGAGATAGAAAGCAACCTGATCATCAAGAATGATAAGTTAGAAGCCTTTGATATTCTCAGGAAAGCCTTAACAATCTCAGCCACAAACATCAACTTCTTGATCTTCACCATTCTCACCTCCCTCCCTCTCTTCTGTTTCTTGGTTTACTATGAACCTTTTCTCCATAAATTCCTCCTTGGAATCTCAGAAATGCTAAAGCCGCCCTCTGCTGATTTGTATTGGTCAACACTATCTCTTTTGTCAATACCAACTGACATAACAAGAAAACTGAACAATGAGTTTCCTGAAGGGTTGGTTCAGATAGGCCTTGTCTATCTGATCCCTCTCCATCTCCTAGAGCTCAGCACCGTCCTCGTGATTGTTGATTTGGCATCCAAGACATATACTAGACAAGAAGAAGAAGAGCCACCATTGACACTCAAGGAAATGGTTCATAAACCCTTCGATGTAACTAGAGTCATAGGCACTTTGGTCACATTTGTGTACGCTTTCATCATTTCGACTATTTCTTTACTAGGATTGATATGGTTAGCAGCAATATACTATGTTGTCACCAAGTTCAATTACGACGTACTAGTCTTGGTGTGGTGTTGGGTGGGATTTCTGGGACTTATGACAATGTATTTGGGATGGAGTGCCGCTTGGAACATGAGCGTTGTGATTTCAATTCTTGAGGGTAGATATGGAACCAAGGCAATGGCTTCAGCAATTTTCTATAGTGTTGGCAATGTGTGGAGAGGGTTTCGTTTGATGCTTGTTTTCTTTGCTTGGGAAGTTGGTTTGAGGTTGCCCTACATCTATTTTGGCTGCAAAGGAACTTGGAGTGTTGGTATTTTGACACAGATTGGTTTGTTCTGTTTGGGAAATGTGGTGAAGTGGGTCGCCTTCACGATTTACTTCTACGATTGCAAGAACCGTGAAATAGAGAGGAAGTTGATAATGAAAGCTAAGAAGAGAGCTGTTGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

37.23

Weight (kDa)

8.45

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 578
AciI CCGC 2 cut(s) 203, 642
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 309, 690
AfaI GTAC 2 cut(s) 488, 576
AgsI TTSAA 3 cut(s) 565, 669, 968
AhlI ACTAGT 1 cut(s) 577
AleI CACNNNNGTG 1 cut(s) 482
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 343, 950, 962
AluI AGCT 3 cut(s) 343, 950, 962
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 1 cut(s) 316
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 536, 810
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
Asp700I GAANNNNTTC 2 cut(s) 159, 432
AsuHPI GGTGA 4 cut(s) 100, 109, 547, 886
BanII GRGCYC 1 cut(s) 345
BauI CACGAG 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 548, 797
BccI CCATC 2 cut(s) 339, 627
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BclI TGATCA 1 cut(s) 21
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 5 cut(s) 338, 390, 456, 518, 578
BfmI CTRYAG 1 cut(s) 718
BisI GCNGC 4 cut(s) 203, 537, 642, 811
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 4 cut(s) 204, 538, 643, 812
BmiI GGNNCC 1 cut(s) 691
BmsI GCATC 2 cut(s) 383, 744
Bpu1102I GCTNAGC 1 cut(s) 344
BpuEI CTTGAG 2 cut(s) 407, 695
BsaJI CCNNGG 2 cut(s) 178, 693
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 817, 847
Bse3DI GCAATG 2 cut(s) 705, 736
BseDI CCNNGG 2 cut(s) 178, 693
BseGI GGATG 2 cut(s) 374, 638
BseMI GCAATG 2 cut(s) 705, 736
BseMII CTCAG 4 cut(s) 73, 93, 201, 358
BseXI GCAGC 2 cut(s) 548, 797
BshFI GGCC 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 21, 102, 321
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 2 cut(s) 203, 642
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 4 cut(s) 72, 92, 200, 357
BspLI GGNNCC 1 cut(s) 691
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 399
BsrDI GCAATG 2 cut(s) 705, 736
BssECI CCNNGG 2 cut(s) 178, 693
BssMI GATC 3 cut(s) 21, 102, 321
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 178, 693
Bst2BI CACGAG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 352, 920
Bst6I CTCTTC 3 cut(s) 137, 399, 950
BstDEI CTNAG 5 cut(s) 59, 79, 187, 344, 951
BstF5I GGATG 2 cut(s) 374, 638
BstKTI GATC 3 cut(s) 24, 105, 324
BstMBI GATC 3 cut(s) 21, 102, 321
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 718
BstV1I GCAGC 2 cut(s) 548, 797
BstXI CCANNNNNNTGG 1 cut(s) 700
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 374, 638
Csp6I GTAC 2 cut(s) 487, 575
CviAII CATG 1 cut(s) 652
CviQI GTAC 2 cut(s) 487, 575
DdeI CTNAG 5 cut(s) 59, 79, 187, 344, 951
DpnI GATC 3 cut(s) 23, 104, 323
DpnII GATC 3 cut(s) 21, 102, 321
DrdI GACNNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 578
Eam1104I CTCTTC 3 cut(s) 137, 399, 950
EarI CTCTTC 3 cut(s) 137, 399, 950
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 178, 693
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 309, 690
EcoICRI GAGCTC 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 178, 693
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 2 cut(s) 178, 693
FaeI CATG 1 cut(s) 655
FaqI GGGAC 1 cut(s) 624
FatI CATG 1 cut(s) 651
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 203, 537, 642, 811
FokI GGATG 2 cut(s) 361, 645
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 4 cut(s) 203, 537, 642, 811
FspBI CTAG 5 cut(s) 338, 390, 456, 518, 578
GluI GCNGC 4 cut(s) 203, 537, 642, 811
HaeIII GGCC 1 cut(s) 309
Hin1II CATG 1 cut(s) 655
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 2 cut(s) 183, 459
HphI GGTGA 4 cut(s) 100, 109, 547, 886
Hpy166II GTNNAC 3 cut(s) 148, 228, 487
Hpy188I TCNGA 3 cut(s) 190, 303, 321
Hpy188III TCNNGA 7 cut(s) 28, 61, 100, 287, 358, 674, 892
Hpy8I GTNNAC 3 cut(s) 148, 228, 487
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 284, 454, 898
HpyCH4III ACNGT 2 cut(s) 352, 920
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 2 cut(s) 813, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 5 cut(s) 59, 79, 187, 344, 951
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 21, 102, 321
LguI GCTCTTC 1 cut(s) 399
LpnPI CCDG 4 cut(s) 32, 46, 300, 593
Lsp1109I GCAGC 2 cut(s) 548, 797
LweI GCATC 2 cut(s) 383, 744
MaeI CTAG 5 cut(s) 338, 390, 456, 518, 578
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 451, 475, 553
MalI GATC 3 cut(s) 23, 104, 323
MboI GATC 3 cut(s) 21, 102, 321
MboII GAAGA 6 cut(s) 97, 124, 410, 413, 416, 967
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 4 cut(s) 170, 565, 669, 711
MlyI GAGTC 1 cut(s) 468
MroXI GAANNNNTTC 2 cut(s) 159, 432
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 482
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 3 cut(s) 21, 102, 321
NlaIII CATG 1 cut(s) 655
NlaIV GGNNCC 1 cut(s) 691
NmuCI GTSAC 2 cut(s) 475, 553
OliI CACNNNNGTG 1 cut(s) 482
PceI AGGCCT 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 399
PdmI GAANNNNTTC 2 cut(s) 159, 432
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 4 cut(s) 204, 538, 643, 812
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 691
RsaI GTAC 2 cut(s) 488, 576
RsaNI GTAC 2 cut(s) 487, 575
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 203, 537, 642, 811
Sau3AI GATC 3 cut(s) 21, 102, 321
SchI GAGTC 1 cut(s) 468
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 21, 122, 160, 345, 576, 791, 952, 964
SfaNI GCATC 2 cut(s) 383, 744
SfcI CTRYAG 1 cut(s) 718
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 422, 674
SmoI CTYRAG 2 cut(s) 422, 674
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 4 cut(s) 170, 565, 669, 711
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 2 cut(s) 203, 642
SspMI CTAG 5 cut(s) 338, 390, 456, 518, 578
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 309
StyI CCWWGG 2 cut(s) 178, 693
TaaI ACNGT 2 cut(s) 352, 920
TaiI ACGT 1 cut(s) 576
TaqI TCGA 2 cut(s) 447, 503
TasI AATT 4 cut(s) 170, 565, 669, 711
TauI GCSGC 2 cut(s) 205, 644
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 2 cut(s) 475, 553
TseI GCWGC 2 cut(s) 536, 810
Tsp45I GTSAC 2 cut(s) 475, 553
TspDTI ATGAA 4 cut(s) 168, 425, 484, 959
XapI RAATTY 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 159, 432
XspI CTAG 5 cut(s) 338, 390, 456, 518, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.