Rroxscaffold_5G00384680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000475
Physical Location & Seq
Reverse (-)
63933064 .. 63933613
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384680.1

Sequence Viewer

Length: 399 bp
ATGGGTCTCCGAGATCTTCTTCGAAACTCCATCATCAGAAAAAGGTGGCAGAAGTCTATATGCGCATACATACTCATGTATTGGTTCTCCTCTGTGTCATTGGAGGCTGTTCTCCTCCTCTATGGTAAGGCAGGTCCGTTGCGCTCATTGAGAAATGAGTGGGCGCCGCCTGTACATTTCTTCACTCAGGTTGGGGTCTCTCTTGTGCGCGACGAGTACAGAGCGTGGATCCTCTTCGAGTTGGAGGGATGGAGTTTTACTAGTGGAGTTGCCTATGCTTTTGTTGACAAAGGCTTGTTCTGTTTGGGGAGGGTTATGAATTGGGTTGCTTGCACGGTTTATTACCATGATTGCAAGAATCGCCACGGACAGGAGGAGGTTCTTGCCAAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.4

Weight (kDa)

8.72

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 163
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 167
AclWI GGATC 2 cut(s) 223, 236
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 2 cut(s) 174, 218
AfiI CCNNNNNNNGG 1 cut(s) 370
AhlI ACTAGT 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 11, 202
AlwI GGATC 2 cut(s) 223, 236
AspLEI GCGC 4 cut(s) 65, 144, 166, 210
AspS9I GGNCC 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 134
BamHI GGATCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 163
BccI CCATC 2 cut(s) 38, 243
BcoDI GTCTC 2 cut(s) 11, 202
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 13
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 165, 230
Bpu14I TTCGAA 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 2 cut(s) 11, 202
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 4 cut(s) 79, 104, 107, 389
Bsh1236I CGCG 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 2 cut(s) 11, 202
Bso31I GGTCTC 2 cut(s) 11, 202
Bsp119I TTCGAA 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 2 cut(s) 13, 228
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 165, 230
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 223, 236
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 2 cut(s) 11, 202
BsrGI TGTACA 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 2 cut(s) 13, 228
BssNI GRCGYC 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 4 cut(s) 65, 144, 166, 210
BstKTI GATC 2 cut(s) 16, 231
BstMAI GTCTC 2 cut(s) 11, 202
BstMBI GATC 2 cut(s) 13, 228
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstUI CGCG 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 13, 228
BstYI RGATCY 2 cut(s) 13, 228
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 331
CfoI GCGC 4 cut(s) 65, 144, 166, 210
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 173, 217
CviAII CATG 2 cut(s) 76, 347
CviJI RGCY 2 cut(s) 107, 294
CviKI_1 RGCY 2 cut(s) 107, 294
CviQI GTAC 2 cut(s) 173, 217
DdeI CTNAG 1 cut(s) 186
DinI GGCGCC 1 cut(s) 165
DpnI GATC 2 cut(s) 15, 230
DpnII GATC 2 cut(s) 13, 228
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco31I GGTCTC 2 cut(s) 11, 202
Eco47I GGWCC 1 cut(s) 134
EgeI GGCGCC 1 cut(s) 165
EheI GGCGCC 1 cut(s) 165
FaeI CATG 2 cut(s) 79, 350
FaiI YATR 9 cut(s) 59, 61, 67, 71, 77, 123, 276, 317, 348
FatI CATG 2 cut(s) 75, 346
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 167
FspAI RTGCGCAY 1 cut(s) 64
FspBI CTAG 1 cut(s) 261
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 4 cut(s) 64, 143, 165, 209
GluI GCNGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 167
HhaI GCGC 4 cut(s) 65, 144, 166, 210
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 2 cut(s) 79, 350
Hin6I GCGC 4 cut(s) 63, 142, 164, 208
HinP1I GCGC 4 cut(s) 63, 142, 164, 208
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 11, 38
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 333, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 79, 350
HspAI GCGC 4 cut(s) 63, 142, 164, 208
KasI GGCGCC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 13, 228
LpnPI CCDG 4 cut(s) 117, 173, 183, 356
MaeI CTAG 1 cut(s) 261
MalI GATC 2 cut(s) 15, 230
MboI GATC 2 cut(s) 13, 228
MboII GAAGA 4 cut(s) 8, 11, 172, 226
MflI RGATCY 2 cut(s) 13, 228
MluCI AATT 1 cut(s) 319
Mly113I GGCGCC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 97, 100, 125, 128, 238, 242, 303, 367, 370
MslI CAYNNNNRTG 1 cut(s) 74
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 360
NarI GGCGCC 1 cut(s) 164
NdeII GATC 2 cut(s) 13, 228
NlaIII CATG 2 cut(s) 79, 350
NlaIV GGNNCC 2 cut(s) 165, 230
NsbI TGCGCA 1 cut(s) 64
NspV TTCGAA 1 cut(s) 22
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 165, 230
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 13, 228
RsaI GTAC 2 cut(s) 174, 218
RsaNI GTAC 2 cut(s) 173, 217
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 13, 228
Sau96I GGNCC 1 cut(s) 134
SetI ASST 4 cut(s) 47, 136, 192, 381
SfoI GGCGCC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 1 cut(s) 319
SsiI CCGC 1 cut(s) 167
SspDI GGCGCC 1 cut(s) 163
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 22, 237
TasI AATT 1 cut(s) 319
TatI WGTACW 2 cut(s) 172, 216
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 332
TspGWI ACGGA 2 cut(s) 126, 381
VpaK11BI GGWCC 1 cut(s) 134
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.