Rh4DG416800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000475
Physical Location & Seq
Reverse (-)
62591981 .. 62592400
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG416800.1

Sequence Viewer

Length: 420 bp
ATGAAGAATCCAATAGATCCCGAGCAGATGAAGCTCTGGTTTCTTGGCACCTTTGCCATAATCATATCAGCCATGAATATCCCCTTCAGAAATCCCAATTTCAAAACCTTTACTTTGATTACCTTAATTCCATTATTTTTCGTAATGTTAATACCAAGACTACTTCATATCCAGGATCCGCTTATTAATTTGTTCATAGAGGCATTAGAAAAGCGAAAAATTCTTACTTACACCTCCACTTTCGCCACCATAAAGACCTCTCGGGCTGTAGAACCGATCACTCAGTTTCCGAAAGCGTACATGGATGACCTGGTCAACTTCCTCACTGCACTGGCAACCATCTATGCTTCCTCAACAATCCATACTAGTAATGGTGATCATGACTTCATGAGGCCTCAATGGGTCTCAGAGATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.08

Weight (kDa)

8.04

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 1 cut(s) 179
AclWI GGATC 3 cut(s) 11, 170, 183
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 70
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 171, 309
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 3 cut(s) 11, 170, 183
Ama87I CYCGRG 2 cut(s) 20, 261
AoxI GGCC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 219
AseI ATTAAT 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 2 cut(s) 20, 261
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 47
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 2 cut(s) 173, 311
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 409
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 411
Bme1390I CCNGG 2 cut(s) 173, 311
BmeT110I CYCGRG 2 cut(s) 20, 261
BmiI GGNNCC 2 cut(s) 49, 177
BmrFI CCNGG 2 cut(s) 173, 311
BsaI GGTCTC 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 173, 311
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 296, 420
BseNI ACTGG 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 47
BsiHKCI CYCGRG 2 cut(s) 20, 261
BsmAI GTCTC 1 cut(s) 409
BsnI GGCC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 409
BsoBI CYCGRG 2 cut(s) 20, 261
Bsp143I GATC 5 cut(s) 16, 175, 276, 376, 411
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 2 cut(s) 295, 419
BspHI TCATGA 2 cut(s) 379, 387
BspLI GGNNCC 2 cut(s) 49, 177
BspPI GGATC 3 cut(s) 11, 170, 183
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 409
BsrI ACTGG 1 cut(s) 336
BssMI GATC 5 cut(s) 16, 175, 276, 376, 411
Bst2UI CCWGG 2 cut(s) 173, 311
BstDEI CTNAG 2 cut(s) 282, 406
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 5 cut(s) 19, 178, 279, 379, 414
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 5 cut(s) 16, 175, 276, 376, 411
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 2 cut(s) 173, 311
BstSCI CCNGG 2 cut(s) 171, 309
BstSFI CTRYAG 1 cut(s) 267
BstX2I RGATCY 3 cut(s) 16, 175, 411
BstYI RGATCY 3 cut(s) 16, 175, 411
BsuRI GGCC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 329
CciI TCATGA 2 cut(s) 379, 387
CsiI ACCWGGT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 298
CviAII CATG 4 cut(s) 73, 301, 380, 388
CviJI RGCY 4 cut(s) 34, 71, 266, 394
CviKI_1 RGCY 4 cut(s) 34, 71, 266, 394
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 282, 406
DpnI GATC 5 cut(s) 18, 177, 278, 378, 413
DpnII GATC 5 cut(s) 16, 175, 276, 376, 411
Eco147I AGGCCT 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 70
Eco88I CYCGRG 2 cut(s) 20, 261
EcoRII CCWGG 2 cut(s) 171, 309
FaeI CATG 4 cut(s) 76, 304, 383, 391
FatI CATG 4 cut(s) 72, 300, 379, 387
FbaI TGATCA 1 cut(s) 376
FokI GGATG 1 cut(s) 317
FspBI CTAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 394
Hin1II CATG 4 cut(s) 76, 304, 383, 391
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 89, 291, 409, 419
Hpy188III TCNNGA 3 cut(s) 20, 380, 388
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 282, 406
Hsp92II CATG 4 cut(s) 76, 304, 383, 391
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 5 cut(s) 16, 175, 276, 376, 411
LpnPI CCDG 6 cut(s) 22, 158, 185, 296, 317, 323
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 1 cut(s) 366
MalI GATC 5 cut(s) 18, 177, 278, 378, 413
MboI GATC 5 cut(s) 16, 175, 276, 376, 411
MboII GAAGA 2 cut(s) 16, 406
MflI RGATCY 3 cut(s) 16, 175, 411
MluCI AATT 4 cut(s) 97, 126, 187, 219
MnlI CCTC 7 cut(s) 193, 244, 268, 332, 361, 384, 405
MseI TTAA 3 cut(s) 125, 149, 186
MspR9I CCNGG 2 cut(s) 173, 311
MvaI CCWGG 2 cut(s) 173, 311
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 5 cut(s) 16, 175, 276, 376, 411
NlaIII CATG 4 cut(s) 76, 304, 383, 391
NlaIV GGNNCC 2 cut(s) 49, 177
PagI TCATGA 2 cut(s) 379, 387
PceI AGGCCT 1 cut(s) 394
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 171, 309
PspGI CCWGG 2 cut(s) 171, 309
PspN4I GGNNCC 2 cut(s) 49, 177
PsuI RGATCY 3 cut(s) 16, 175, 411
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 3 cut(s) 125, 149, 186
Sau3AI GATC 5 cut(s) 16, 175, 276, 376, 411
ScrFI CCNGG 2 cut(s) 173, 311
SetI ASST 7 cut(s) 36, 53, 110, 125, 236, 260, 312
SexAI ACCWGGT 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 267
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 4 cut(s) 97, 126, 187, 219
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 366
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 171, 309
TasI AATT 4 cut(s) 97, 126, 187, 219
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 125, 149, 186
Tru9I TTAA 3 cut(s) 125, 149, 186
TscAI CASTG 2 cut(s) 331, 336
TspDTI ATGAA 6 cut(s) 17, 44, 89, 155, 184, 376
TspRI CASTG 2 cut(s) 331, 336
Tth111I GACNNNGTC 1 cut(s) 311
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.