Rh4AG410300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000475
Physical Location & Seq
Reverse (-)
70979833 .. 70981414
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG410300.1

Sequence Viewer

Length: 966 bp
ATGGAGATAGAAAGCAATATGATCATCAAGAATGATAAGTTAGAAGCCTTTGATATTCTCAAAAAAGCCTTCACAATCTCAGCCACAAACATCAAATTCTTGATCTTCACCATTCTCACCTCCCTCCCTCTCTTCTGTTTCTTGGTTTACTATGAACCTTTTCTCCAAAGATTCATCCTTGAAATCTCAGAAATACTAAGGCCCTCCAAAGATGGTTACTTCCGTTATTCAATACCAAGTTTATCAACTGACATGACAACAAAACTAAACAATGAGTTTCCTGGTGGGTTGGTTCAGATAGCCCTTCTCTATCTGATCCCTCTCCATCTCCTAGAGCTCAGCACCGTCCTTGTGATTGTTGATTTGGCATCAAAGACATATACTACACAAGATGAAGAAGAGCCACCATTGACTCTCATGGAAATGGTTCATAAGCCCTTCGACGTAACTAGAGTCCTAGGTACTTTGGTCACATTTGTGTATGTTGTGATCATGTCGTCTAGTTCTCTACTAGGTTTGGTATGGTTAGCAGTAATATATTATGTTGTCACCAAGTTCGTCATCATGTGGTGTTGGGTGGGATTTGTGGAATTTGTGGGACTTTTTACACTGTATTTGGGATGGATTGCCGCGTTGAACATGAGTGTTGTGATTTCAATTCTTGAGGGGAGATATGGAACCAAGGCAATTGCTTTAGCCATTTGTTATAGTGTTGGTAACGAGTGGAGAGGGTTTCGTTTGATGCTTGTTTTCTTTGCTTGGGAAGTTGGTTTGAGGTTGCCCTGCATCTATTTTGGCTGCAAAGGAACTTGGAGTGTTGGCATTTTGACACAGATTGGCGTCTTCTGTTTGGGAAATGTGGTGAAGTGGGTCGTGTTCACGATTTACTTCTACGATTGCAAGAACCGTGAAATAGAGAGGAAGTTGATGATGAAAGCTAAGAAGAGAGCTGTTGAAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.75

Weight (kDa)

8.06

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 632
AciI CCGC 1 cut(s) 630
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 2 cut(s) 95, 590
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 1 cut(s) 463
AgsI TTSAA 5 cut(s) 182, 231, 637, 657, 956
AjnI CCWGG 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 476
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 337, 938, 950
AluI AGCT 3 cut(s) 337, 938, 950
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 1 cut(s) 310
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 798
ApoI RAATTY 2 cut(s) 95, 590
Asp700I GAANNNNTTC 2 cut(s) 159, 426
AspA2I CCTAGG 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 100, 109, 541, 874
AvrII CCTAGG 1 cut(s) 457
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 835
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 785
BccI CCATC 3 cut(s) 206, 333, 615
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 2 cut(s) 21, 489
BfaI CTAG 5 cut(s) 332, 450, 458, 501, 512
BisI GCNGC 2 cut(s) 630, 799
BlnI CCTAGG 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 2 cut(s) 631, 800
Bme1390I CCNGG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 679
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 3 cut(s) 377, 732, 795
BpiI GAAGAC 1 cut(s) 835
Bpu1102I GCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 840
BsaJI CCNNGG 2 cut(s) 457, 681
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 457, 681
BseGI GGATG 2 cut(s) 174, 626
BseMII CTCAG 3 cut(s) 93, 201, 352
BseXI GCAGC 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 632
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 339
BslFI GGGAC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 612
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 4 cut(s) 21, 102, 315, 489
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 1 cut(s) 630
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 3 cut(s) 92, 200, 351
BspFNI CGCG 1 cut(s) 632
BspLI GGNNCC 1 cut(s) 679
BspPI GGATC 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 457, 681
BssMI GATC 4 cut(s) 21, 102, 315, 489
BssNI GRCGYC 1 cut(s) 840
BssT1I CCWWGG 2 cut(s) 457, 681
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 346, 612, 908
Bst6I CTCTTC 3 cut(s) 137, 393, 938
BstACI GRCGYC 1 cut(s) 840
BstDEI CTNAG 5 cut(s) 79, 187, 197, 338, 939
BstF5I GGATG 2 cut(s) 174, 626
BstFNI CGCG 1 cut(s) 632
BstKTI GATC 4 cut(s) 24, 105, 318, 492
BstMBI GATC 4 cut(s) 21, 102, 315, 489
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 785
BstV2I GAAGAC 1 cut(s) 835
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 174, 626
BtsIMutI CAGTG 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 829
Csp6I GTAC 1 cut(s) 462
CviAII CATG 5 cut(s) 253, 418, 493, 565, 640
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 5 cut(s) 79, 187, 197, 338, 939
DpnI GATC 4 cut(s) 23, 104, 317, 491
DpnII GATC 4 cut(s) 21, 102, 315, 489
Eam1104I CTCTTC 3 cut(s) 137, 393, 938
EarI CTCTTC 3 cut(s) 137, 393, 938
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 457, 681
Eco24I GRGCYC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 457, 681
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 2 cut(s) 457, 681
FaeI CATG 5 cut(s) 256, 421, 496, 568, 643
FaqI GGGAC 1 cut(s) 612
FatI CATG 5 cut(s) 252, 417, 492, 564, 639
FbaI TGATCA 2 cut(s) 21, 489
Fnu4HI GCNGC 2 cut(s) 630, 799
FokI GGATG 2 cut(s) 161, 633
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 630, 799
FspBI CTAG 5 cut(s) 332, 450, 458, 501, 512
GluI GCNGC 2 cut(s) 630, 799
HaeIII GGCC 1 cut(s) 202
HgaI GACGC 1 cut(s) 829
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 5 cut(s) 256, 421, 496, 568, 643
HinfI GANTC 3 cut(s) 171, 412, 453
HphI GGTGA 4 cut(s) 100, 109, 541, 874
Hpy166II GTNNAC 2 cut(s) 148, 879
Hpy188I TCNGA 3 cut(s) 190, 297, 315
Hpy188III TCNNGA 4 cut(s) 28, 100, 662, 880
Hpy8I GTNNAC 2 cut(s) 148, 879
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 79, 314, 448
HpyCH4III ACNGT 3 cut(s) 346, 612, 908
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 3 cut(s) 786, 801, 900
HpyF3I CTNAG 5 cut(s) 79, 187, 197, 338, 939
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 5 cut(s) 256, 421, 496, 568, 643
Ksp22I TGATCA 2 cut(s) 21, 489
Kzo9I GATC 4 cut(s) 21, 102, 315, 489
LguI GCTCTTC 1 cut(s) 393
LpnPI CCDG 3 cut(s) 267, 294, 796
Lsp1109I GCAGC 1 cut(s) 785
LweI GCATC 3 cut(s) 377, 732, 795
MaeI CTAG 5 cut(s) 332, 450, 458, 501, 512
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 5 cut(s) 215, 445, 469, 547, 716
MalI GATC 4 cut(s) 23, 104, 317, 491
MboI GATC 4 cut(s) 21, 102, 315, 489
MboII GAAGA 6 cut(s) 97, 124, 407, 410, 835, 955
MfeI CAATTG 1 cut(s) 687
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 95, 590, 657, 687
MlyI GAGTC 2 cut(s) 406, 462
MnlI CCTC 9 cut(s) 130, 134, 138, 214, 330, 658, 722, 768, 912
MroXI GAANNNNTTC 2 cut(s) 159, 426
MseI TTAA 1 cut(s) 964
MslI CAYNNNNRTG 2 cut(s) 422, 476
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 632
NdeII GATC 4 cut(s) 21, 102, 315, 489
NlaIII CATG 5 cut(s) 256, 421, 496, 568, 643
NlaIV GGNNCC 1 cut(s) 679
NmuCI GTSAC 2 cut(s) 469, 547
OliI CACNNNNGTG 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 393
PdmI GAANNNNTTC 2 cut(s) 159, 426
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 631, 800
PleI GAGTC 2 cut(s) 406, 461
PpsI GAGTC 2 cut(s) 406, 461
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 679
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 2 cut(s) 422, 476
SacI GAGCTC 1 cut(s) 339
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 964
SatI GCNGC 2 cut(s) 630, 799
Sau3AI GATC 4 cut(s) 21, 102, 315, 489
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 2 cut(s) 406, 462
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 339
SetI ASST 9 cut(s) 122, 160, 339, 447, 463, 517, 779, 940, 952
SfaNI GCATC 3 cut(s) 377, 732, 795
SmiMI CAYNNNNRTG 2 cut(s) 422, 476
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 4 cut(s) 95, 590, 657, 687
SsiI CCGC 1 cut(s) 630
SspMI CTAG 5 cut(s) 332, 450, 458, 501, 512
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 457, 681
TaaI ACNGT 3 cut(s) 346, 612, 908
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 441
TasI AATT 4 cut(s) 95, 590, 657, 687
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 964
Tru9I TTAA 1 cut(s) 964
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 2 cut(s) 469, 547
TseI GCWGC 1 cut(s) 798
Tsp45I GTSAC 2 cut(s) 469, 547
TspDTI ATGAA 5 cut(s) 163, 168, 408, 419, 947
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 615
XapI RAATTY 2 cut(s) 95, 590
XmaJI CCTAGG 1 cut(s) 457
XmnI GAANNNNTTC 2 cut(s) 159, 426
XspI CTAG 5 cut(s) 332, 450, 458, 501, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.