FvH4_4g34730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32335512 .. 32336408
897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34730.t1

Sequence Viewer

Length: 897 bp
ATGAAGAATCCCAATGAACTTAAGCAGACCAAGCCATGGCTTCTTGGCACCATTGGTATAATGGGATCGGCCATGAAAATTCCCTTTGCAAATCCCAATTTCATAACCTTCATTTTGATCACCTCCTTTCCACTTTTCTGCATGATGAACTTCATACCAAGATTAAGATCACGTTATGACTTTCGGCAGCCTAGTTTCATCATGGAGGCATCATTGGAGCTACGGCGGCTCATTACTCACCCCAACACTCTGTCATCTTCTATACCATGGTTTCAAGATTGGACAATACGACTACTCAATTCATGGGTTTTCGACATGATCAAGTTGCTTGTTGCACTCACATCTATCTACTCTGCTTCCATTATCTTTACTAGTAGTGTTGGCAAGTCAATGAGTCTCCGAGACCTTGTTCAGAATTCTATCACCAAAACTCGGTGGCATCAGCCTATAATTACATACATCTCTCTGTCCCTAATTTCCTCCATCTTTTTAGAAGGTTTTAGACATTGGTTAAAGGCAAGGCCTACGAATCCCTACTTGATCACCCTACAATTTTTAGTTCCATTTGTGGCCGTTGCCAAATGGTTAGAGTTCATAGCCTTGACGAATGTGGCTGTTGTTGTGTCCGTTTTAGAAGACAATATCAGAGGACCGTTTGAAGCCTACTCAACCTCATCAGAGCTGAGCAGAGGAAATAGACTAAGAGGGTTGGTTTTGATAATTCTCCATTCTACTGTGCTCTCAGGTTTGAAAAGCCTCTTGAATTGGAGTTTTTCTAGTATACCTGCATATCATTTCATTCAGAAAATCCTCTCTTGTTTGCAGTGGATGATGTTCTGGGTGGTTTTTACTGTTTATTACTACGACTGTAAGAATCGTCACAAAAGCATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.52

Weight (kDa)

10.01

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 793
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 781
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 69, 570
AcsI RAATTY 2 cut(s) 78, 415
AfiI CCNNNNNNNGG 2 cut(s) 36, 432
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 4 cut(s) 275, 659, 751, 763
AhlI ACTAGT 1 cut(s) 371
AluBI AGCT 2 cut(s) 220, 682
AluI AGCT 2 cut(s) 220, 682
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 396, 401
AlwI GGATC 1 cut(s) 73
AoxI GGCC 3 cut(s) 69, 521, 570
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 2 cut(s) 78, 415
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 4 cut(s) 112, 230, 415, 535
AvaII GGWCC 1 cut(s) 650
BanI GGYRCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 239, 557
BclI TGATCA 3 cut(s) 117, 318, 540
BcoDI GTCTC 2 cut(s) 396, 401
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 3 cut(s) 192, 372, 777
BfrI CTTAAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 793
BisI GCNGC 2 cut(s) 188, 227
BlpI GCTNAGC 1 cut(s) 683
BlsI GCNGC 2 cut(s) 189, 228
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 2 cut(s) 218, 448
BpiI GAAGAC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 35, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 432
Bse8I GATNNNNATC 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 35, 266
BseGI GGATG 1 cut(s) 834
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 36, 432
BseMII CTCAG 2 cut(s) 674, 756
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 3 cut(s) 71, 523, 572
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 741
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 36, 432
BsmAI GTCTC 2 cut(s) 396, 401
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 3 cut(s) 71, 523, 572
Bso31I GGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 5 cut(s) 65, 117, 167, 318, 540
Bsp1720I GCTNAGC 1 cut(s) 683
Bsp19I CCATGG 2 cut(s) 35, 266
BspACI CCGC 1 cut(s) 226
BspANI GGCC 3 cut(s) 71, 523, 572
BspCNI CTCAG 2 cut(s) 675, 755
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 793
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 396
BssECI CCNNGG 2 cut(s) 35, 266
BssMI GATC 5 cut(s) 65, 117, 167, 318, 540
BssNAI GTATAC 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 35, 266
Bst1107I GTATAC 1 cut(s) 782
Bst4CI ACNGT 4 cut(s) 654, 736, 853, 869
BstAFI CTTAAG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 890
BstDEI CTNAG 3 cut(s) 683, 701, 742
BstDSI CCRYGG 2 cut(s) 35, 266
BstF5I GGATG 1 cut(s) 834
BstKTI GATC 5 cut(s) 68, 120, 170, 321, 543
BstMAI GTCTC 2 cut(s) 396, 401
BstMBI GATC 5 cut(s) 65, 117, 167, 318, 540
BstMWI GCNNNNNNNGC 2 cut(s) 31, 226
BstNSI RCATGY 1 cut(s) 892
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 642
BstZ17I GTATAC 1 cut(s) 782
BsuRI GGCC 3 cut(s) 71, 523, 572
BtgI CCRYGG 2 cut(s) 35, 266
BtsCI GGATG 1 cut(s) 834
BtsI GCAGTG 1 cut(s) 830
BtsIMutI CAGTG 1 cut(s) 830
BveI ACCTGC 1 cut(s) 793
Cac8I GCNNGC 1 cut(s) 890
Cfr13I GGNCC 1 cut(s) 650
CviAII CATG 8 cut(s) 36, 73, 142, 202, 267, 303, 316, 889
DdeI CTNAG 3 cut(s) 683, 701, 742
DpnI GATC 5 cut(s) 67, 119, 169, 320, 542
DpnII GATC 5 cut(s) 65, 117, 167, 318, 540
EaeI YGGCCR 2 cut(s) 69, 570
Eco130I CCWWGG 2 cut(s) 35, 266
Eco147I AGGCCT 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 35, 266
ErhI CCWWGG 2 cut(s) 35, 266
FaeI CATG 8 cut(s) 39, 76, 145, 205, 270, 306, 319, 892
FaqI GGGAC 1 cut(s) 454
FatI CATG 8 cut(s) 35, 72, 141, 201, 266, 302, 315, 888
FbaI TGATCA 3 cut(s) 117, 318, 540
FblI GTMKAC 1 cut(s) 781
Fnu4HI GCNGC 2 cut(s) 188, 227
FokI GGATG 1 cut(s) 841
Fsp4HI GCNGC 2 cut(s) 188, 227
FspBI CTAG 3 cut(s) 192, 372, 777
GluI GCNGC 2 cut(s) 188, 227
HaeIII GGCC 3 cut(s) 71, 523, 572
Hin1II CATG 8 cut(s) 39, 76, 145, 205, 270, 306, 319, 892
HinfI GANTC 4 cut(s) 7, 394, 529, 874
HphI GGTGA 4 cut(s) 112, 230, 415, 535
Hpy166II GTNNAC 1 cut(s) 782
Hpy188I TCNGA 5 cut(s) 401, 414, 647, 679, 804
Hpy188III TCNNGA 2 cut(s) 275, 760
Hpy8I GTNNAC 1 cut(s) 782
HpyAV CCTTC 2 cut(s) 118, 488
HpyCH4III ACNGT 4 cut(s) 654, 736, 853, 869
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 89, 141, 335, 788, 823, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 226
HpyF3I CTNAG 3 cut(s) 683, 701, 742
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 8 cut(s) 39, 76, 145, 205, 270, 306, 319, 892
Ksp22I TGATCA 3 cut(s) 117, 318, 540
Kzo9I GATC 5 cut(s) 65, 117, 167, 318, 540
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 729, 798, 823
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 2 cut(s) 218, 448
MaeI CTAG 3 cut(s) 192, 372, 777
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 878
MalI GATC 5 cut(s) 67, 119, 169, 320, 542
MboI GATC 5 cut(s) 65, 117, 167, 318, 540
MboII GAAGA 3 cut(s) 16, 249, 647
MhlI GDGCHC 1 cut(s) 741
MluCI AATT 9 cut(s) 78, 97, 298, 415, 450, 474, 551, 720, 763
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 9 cut(s) 133, 199, 490, 641, 682, 683, 698, 767, 821
MseI TTAA 3 cut(s) 21, 164, 512
MspCI CTTAAG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 31, 226
NcoI CCATGG 2 cut(s) 35, 266
NdeII GATC 5 cut(s) 65, 117, 167, 318, 540
NlaIII CATG 8 cut(s) 39, 76, 145, 205, 270, 306, 319, 892
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 878
NspI RCATGY 1 cut(s) 892
PaeI GCATGC 1 cut(s) 892
PceI AGGCCT 1 cut(s) 523
PfeI GAWTC 3 cut(s) 7, 529, 874
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 2 cut(s) 189, 228
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 21, 164, 512
SatI GCNGC 2 cut(s) 188, 227
Sau3AI GATC 5 cut(s) 65, 117, 167, 318, 540
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 1 cut(s) 403
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 2 cut(s) 218, 448
SinI GGWCC 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 371
SphI GCATGC 1 cut(s) 892
Sse9I AATT 9 cut(s) 78, 97, 298, 415, 450, 474, 551, 720, 763
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 1 cut(s) 226
SspMI CTAG 3 cut(s) 192, 372, 777
StuI AGGCCT 1 cut(s) 523
StyI CCWWGG 2 cut(s) 35, 266
TaaI ACNGT 4 cut(s) 654, 736, 853, 869
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 312
TasI AATT 9 cut(s) 78, 97, 298, 415, 450, 474, 551, 720, 763
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 3 cut(s) 7, 529, 874
Tru1I TTAA 3 cut(s) 21, 164, 512
Tru9I TTAA 3 cut(s) 21, 164, 512
TscAI CASTG 1 cut(s) 830
TseFI GTSAC 1 cut(s) 878
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 878
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 1 cut(s) 830
Van91I CCANNNNNTGG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 2 cut(s) 78, 415
XceI RCATGY 1 cut(s) 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 781
XspI CTAG 3 cut(s) 192, 372, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.