Rh4CG435900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000475
Physical Location & Seq
Reverse (-)
67405301 .. 67405555
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG435900.1

Sequence Viewer

Length: 255 bp
ATGTCAGATGTTCTTCGACTACCTCATCAGTACATCCACTCTGAATGGCTCATACCAATTGGTATCATCAACAAATTGAACCAAGACTTTCCTGATGGGTTGATTCAACTAGTCCTTCTCTATCTGGTGCCTCTCCATCTCCTAGAGCTCGGTACTGTGCTAGTGACTGTCGATTTGGCATCACGGATATACAAAGAAGAGAAACATTTGAGTCTCAAGGAATGGTGCATAAACCCTTCAACAAAACAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.73

Weight (kDa)

5.71

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AfaI GTAC 2 cut(s) 32, 154
AgsI TTSAA 3 cut(s) 79, 107, 240
AhlI ACTAGT 1 cut(s) 109
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 89, 144
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 3 cut(s) 110, 143, 161
BmiI GGNNCC 1 cut(s) 129
BmsI GCATC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 200
BseGI GGATG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 157, 169
Bst6I CTCTTC 1 cut(s) 192
BstF5I GGATG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 33
Csp6I GTAC 2 cut(s) 31, 153
CviJI RGCY 2 cut(s) 49, 148
CviKI_1 RGCY 2 cut(s) 49, 148
CviQI GTAC 2 cut(s) 31, 153
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 150
FaiI YATR 3 cut(s) 53, 190, 230
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 150
FspBI CTAG 3 cut(s) 110, 143, 161
HinfI GANTC 2 cut(s) 103, 211
Hpy188I TCNGA 2 cut(s) 7, 43
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 125, 246
HpyCH4III ACNGT 2 cut(s) 157, 169
HpyCH4V TGCA 1 cut(s) 228
LpnPI CCDG 2 cut(s) 105, 110
LweI GCATC 1 cut(s) 188
MaeI CTAG 3 cut(s) 110, 143, 161
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 2 cut(s) 5, 209
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 57, 74
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 2 cut(s) 33, 141
MunI CAATTG 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 103
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 129
RsaI GTAC 2 cut(s) 32, 154
RsaNI GTAC 2 cut(s) 31, 153
SacI GAGCTC 1 cut(s) 150
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 150
SetI ASST 2 cut(s) 25, 150
SfaNI GCATC 1 cut(s) 188
SgeI CNNG 9 cut(s) 95, 104, 122, 137, 155, 161, 173, 195, 229
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 2 cut(s) 57, 74
SspMI CTAG 3 cut(s) 110, 143, 161
SstI GAGCTC 1 cut(s) 150
TaaI ACNGT 2 cut(s) 157, 169
TaqI TCGA 2 cut(s) 16, 171
TasI AATT 2 cut(s) 57, 74
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 199
XspI CTAG 3 cut(s) 110, 143, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.