Prupe.1G255700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000475
Physical Location & Seq
Reverse (-)
26618214 .. 26619648
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G255700.1

Sequence Viewer

Length: 996 bp
ATGGAGATGGAAAGCAACCTTATCATGAAAAATCCGAAGCTTGAAGCCTTCGGTATTCTCAGAAAAGCTCTTATAATCTCTACAAGAAACACCAACTTCTTTATCTTCATCATTCTCACCTCCCTTCCTCTGTTCTGTTTCTTGGTTTACTATGAATCTTCTCTCCAAAAATCCCTGGTTGAAATCTCAAAAATTCTAAATCCACTCCACAACAATGTCCATGGTTACAATGCTTACTTCAACTTGAGTTGGTCAATACCATTAGACATAGCCACAAAATTGAACAAAGAGTTTCCTTATGAGTTGACTCATCTTGGTCTTCTCTATCTGGTGCCTCTCCATCTCCTAAAGCTCAGCACTGTGATTGTGATTGTCCATTTGGCATCAAAAATATACACAGAAGAGATACCGACAACGATGACTTTCAAAGAGATGGTACATAGACCCTTTGGCAAAACAAGACTGAAGGGCACATTTGTTACATATGTCTATGTTCTTTTCTTGTCAACTTTTACTCTTCTAGGATTGGCATGGTTAGGAATAACATACTATGCTCTCTTCAGGGACTTCAGCTTCATGGATGATCGTGTTTCCTATGCTGTTCTTTGTTGGCCATCTTTTGTAGCATTGCTAGCAATGTATTTGGCATGGAGTTCTGTATGGAATGTGAGTGTTGTGATTTCAATTTTGGAGGGGACACATGGAATCAAGGCATTTGGTCAAGCAATATATCTCACCAGTGGTTGTGAGTGGAGAGGGTTTATTTTGATGCTTATTTTTTGTGCTTGGGAAGTAGGTTTAAGGTTGCCATGCCTCTACATTGGCAGCTATGAAAGAGGGAATTATATTGGTCTTGTTGCACAGGTTAGCTTGTTCTGCTTTGGGAATGTGCTGAAGTGGGTTGCCTGCATGATATATTTCTACGATTGCAAGAACCGGGCTTTAGAGAAGAAGCTAATGATGAAGAGTAAGAAGAGAGTTGAAAGCTGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.1

Weight (kDa)

9.07

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 611
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 4 cut(s) 485, 544, 553, 914
AfaI GTAC 1 cut(s) 438
AgsI TTSAA 7 cut(s) 44, 182, 241, 283, 427, 684, 983
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 8 cut(s) 40, 68, 352, 573, 828, 870, 955, 987
AluI AGCT 8 cut(s) 40, 68, 352, 573, 828, 870, 955, 987
AoxI GGCC 1 cut(s) 611
ApeKI GCWGC 1 cut(s) 825
ApoI RAATTY 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 2 cut(s) 109, 727
AsuNHI GCTAGC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 613
BanI GGYRCC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 837
BccI CCATC 3 cut(s) 348, 427, 622
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 1 cut(s) 938
BfaI CTAG 2 cut(s) 521, 632
BisI GCNGC 1 cut(s) 826
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 827
Bme1390I CCNGG 2 cut(s) 176, 938
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 2 cut(s) 176, 938
BmsI GCATC 2 cut(s) 392, 759
BmtI GCTAGC 1 cut(s) 635
BpiI GAAGAC 1 cut(s) 311
Bpu1102I GCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 938
BsaJI CCNNGG 2 cut(s) 174, 220
Bse1I ACTGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 626, 642
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 174, 220
BseGI GGATG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 626, 642
BseMII CTCAG 2 cut(s) 73, 367
BseNI ACTGG 1 cut(s) 738
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 837
BshFI GGCC 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 937
BslFI GGGAC 2 cut(s) 578, 709
BsmFI GGGAC 2 cut(s) 578, 709
BsnI GGCC 1 cut(s) 613
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 583
Bsp1720I GCTNAGC 1 cut(s) 353
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 1 cut(s) 613
BspCNI CTCAG 2 cut(s) 72, 366
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 333
BspOI GCTAGC 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 626, 642
BsrI ACTGG 1 cut(s) 738
BssECI CCNNGG 2 cut(s) 174, 220
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 5 cut(s) 396, 522, 563, 959, 968
BstC8I GCNNGC 2 cut(s) 633, 907
BstDEI CTNAG 2 cut(s) 59, 353
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 1 cut(s) 586
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 2 cut(s) 632, 876
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 174, 936
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 837
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 613
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 357, 745
Cac8I GCNNGC 2 cut(s) 633, 907
CciI TCATGA 1 cut(s) 24
Csp6I GTAC 1 cut(s) 437
CviAII CATG 8 cut(s) 25, 221, 531, 577, 648, 701, 810, 910
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 2 cut(s) 59, 353
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 611
Eam1104I CTCTTC 5 cut(s) 396, 522, 563, 959, 968
EarI CTCTTC 5 cut(s) 396, 522, 563, 959, 968
Eco130I CCWWGG 1 cut(s) 220
Eco57I CTGAAG 4 cut(s) 485, 544, 553, 914
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 8 cut(s) 28, 224, 534, 580, 651, 704, 813, 913
FaqI GGGAC 2 cut(s) 578, 709
FatI CATG 8 cut(s) 24, 220, 530, 576, 647, 700, 809, 909
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 826
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 1 cut(s) 826
FspBI CTAG 2 cut(s) 521, 632
GluI GCNGC 1 cut(s) 826
HaeIII GGCC 1 cut(s) 613
HapII CCGG 1 cut(s) 937
Hin1II CATG 8 cut(s) 28, 224, 534, 580, 651, 704, 813, 913
HincII GTYRAC 2 cut(s) 306, 507
HindII GTYRAC 2 cut(s) 306, 507
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 3 cut(s) 155, 307, 705
HpaII CCGG 1 cut(s) 937
HphI GGTGA 2 cut(s) 109, 727
Hpy166II GTNNAC 3 cut(s) 148, 306, 507
Hpy188I TCNGA 2 cut(s) 36, 62
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 3 cut(s) 148, 306, 507
HpyAV CCTTC 3 cut(s) 58, 134, 460
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 860, 909, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 876
HpyF3I CTNAG 2 cut(s) 59, 353
Hsp92II CATG 8 cut(s) 28, 224, 534, 580, 651, 704, 813, 913
Kzo9I GATC 1 cut(s) 583
LpnPI CCDG 8 cut(s) 161, 188, 314, 547, 751, 848, 919, 950
Lsp1109I GCAGC 1 cut(s) 837
LweI GCATC 2 cut(s) 392, 759
MaeI CTAG 2 cut(s) 521, 632
MaeIII GTNAC 2 cut(s) 224, 478
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 9 cut(s) 97, 150, 311, 413, 509, 550, 961, 976, 985
MhlI GDGCHC 1 cut(s) 473
MlsI TGGCCA 1 cut(s) 613
MluCI AATT 4 cut(s) 192, 278, 684, 841
MluNI TGGCCA 1 cut(s) 613
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 7 cut(s) 130, 138, 345, 685, 749, 824, 830
Mox20I TGGCCA 1 cut(s) 613
MscI TGGCCA 1 cut(s) 613
MseI TTAA 1 cut(s) 800
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 613
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 2 cut(s) 176, 938
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 632, 876
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 484
NdeII GATC 1 cut(s) 583
NheI GCTAGC 1 cut(s) 631
NlaIII CATG 8 cut(s) 28, 224, 534, 580, 651, 704, 813, 913
NlaIV GGNNCC 1 cut(s) 333
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 2 cut(s) 155, 705
PkrI GCNGC 1 cut(s) 827
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PsiI TTATAA 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 333
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 1 cut(s) 826
Sau3AI GATC 1 cut(s) 583
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 176, 938
SduI GDGCHC 1 cut(s) 473
SfaNI GCATC 2 cut(s) 392, 759
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 4 cut(s) 192, 278, 684, 841
SspMI CTAG 2 cut(s) 521, 632
StyD4I CCNGG 2 cut(s) 174, 936
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 361
TasI AATT 4 cut(s) 192, 278, 684, 841
TfiI GAWTC 2 cut(s) 155, 705
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 2 cut(s) 364, 745
TseI GCWGC 1 cut(s) 825
TspDTI ATGAA 6 cut(s) 41, 97, 168, 565, 846, 977
TspRI CASTG 2 cut(s) 364, 745
XapI RAATTY 1 cut(s) 192
XspI CTAG 2 cut(s) 521, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.