RLG00000023773

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000475
Physical Location & Seq
Reverse (-)
28070091 .. 28071104
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023773

Sequence Viewer

Length: 1014 bp
ATGGGAAGTGAAAGCATGGAAATGGAGAGCAACATAATATTGAAGAACCAGAAGCTGGGTGCCTTTATCATTCTTAGAAAAGCTTTAGGTATCATTGCCACAAACATCAACTTCTTTCTGTTCTCTATTTTCGCTTCACTTCCTCTCTTCTGTTTCTTGGTTTACTATCAACCTTTTCTGCAAGAATTCCAGGATCAAGTATTAGAAATTCTAAAACATCCGGCCTTTGTTTATTTTTTTGAGGAGGACATGTTTAATTGGTCATTACAATATGATGTAACCCCGGAATATGATGTAACCCCGGAATGGAACAAAGGGTTTCCTGGTGAGTTGATTCTACAAGCTCTTCTCTATCTGGTGCCTCTCCATCTCCTAGAGCTCATCACTGCGCTTGCAATTGCTATTTTGGCCTCGAAGATATATAAAGAAGAGAGACCAATGACTCTGAAGGAGATGGTACATAATCAACCTTTCGACAAAACCACACTGAAAGCTTTTCTCATCACATCTGTCTATGTTCTCGTCTTGTCGACCTGTAGTGATATACTCGGATCTGTATGGTCAGCTGCAAGCTACTCTTTTGTATTCAGGTATTTCAACCGTGAAATATTCTTATCTTTATGGTGTTGTATAGCATCTGTAGCAATGCTTACAATGTATTTGGCATGGAATGTGATATGGAATATGAGTATCGTGATTTCAATATTGGAGGGGTTACATGGAATCAAGGCATTCGGTCTAGTAACGTATCTAAGCACGGGGAACGGGTGGGGAGGGTTTCTTTTGATGTTCATTTTCTTTGCTTGGGAAGTAACTTTAAGGTTGCCATGTCTCTATTTTGGCTGCAAAGAAAGGGGGAATGAAATGTTTGTTGCACAGAGTATCTTGTTGTGCTTTGGGAATGTGTTCGAGTTGGTCGTCTTTGTGATATATTTCCACGATTGCAAGAACCGGGTTTTAGAAAAGCTGTTGATGATCAAGGCTAACAAAGCTGGTGATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.75

Weight (kDa)

5.46

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 59, 358
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 1 cut(s) 530
AclWI GGATC 2 cut(s) 201, 559
AcsI RAATTY 2 cut(s) 185, 207
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 55, 306
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 43, 598, 702
AjnI CCWGG 2 cut(s) 189, 322
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 427, 836
AlwI GGATC 2 cut(s) 201, 559
AlwNI CAGNNNCTG 1 cut(s) 55
AoxI GGCC 2 cut(s) 222, 408
ApeKI GCWGC 2 cut(s) 566, 843
ApoI RAATTY 2 cut(s) 185, 207
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 1 cut(s) 391
AsuC2I CCSGG 3 cut(s) 284, 302, 953
AsuHPI GGTGA 2 cut(s) 338, 1007
BanI GGYRCC 2 cut(s) 59, 358
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 553, 830
BccI CCATC 2 cut(s) 375, 448
BciT130I CCWGG 2 cut(s) 191, 324
BclI TGATCA 2 cut(s) 975, 997
BcnI CCSGG 3 cut(s) 284, 302, 953
BcoDI GTCTC 2 cut(s) 427, 836
BfaI CTAG 2 cut(s) 374, 740
BfmI CTRYAG 2 cut(s) 535, 639
BisI GCNGC 2 cut(s) 567, 844
BlsI GCNGC 2 cut(s) 568, 845
Bme1390I CCNGG 5 cut(s) 191, 284, 302, 324, 953
BmiI GGNNCC 2 cut(s) 61, 360
BmrFI CCNGG 5 cut(s) 191, 284, 302, 324, 953
BmsI GCATC 1 cut(s) 644
BpuMI CCSGG 3 cut(s) 284, 302, 953
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 2 cut(s) 282, 300
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 306
Bse3DI GCAATG 2 cut(s) 93, 651
BseBI CCWGG 2 cut(s) 191, 324
BseDI CCNNGG 2 cut(s) 282, 300
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 55, 306
BseMI GCAATG 2 cut(s) 93, 651
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 553, 830
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 224, 410
BshNI GGYRCC 2 cut(s) 59, 358
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 4 cut(s) 221, 284, 302, 952
BslI CCNNNNNNNGG 2 cut(s) 55, 306
BsmAI GTCTC 2 cut(s) 427, 836
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 224, 410
Bso31I GGTCTC 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 193, 551, 975, 997
BspANI GGCC 2 cut(s) 224, 410
BspLI GGNNCC 2 cut(s) 61, 360
BspPI GGATC 2 cut(s) 201, 559
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 2 cut(s) 59, 358
BspTNI GGTCTC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 93, 651
BssECI CCNNGG 2 cut(s) 282, 300
BssMI GATC 4 cut(s) 193, 551, 975, 997
Bst2UI CCWGG 2 cut(s) 191, 324
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 3 cut(s) 152, 351, 423
BstC8I GCNNGC 2 cut(s) 393, 571
BstDEI CTNAG 2 cut(s) 74, 752
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 4 cut(s) 196, 554, 978, 1000
BstMAI GTCTC 2 cut(s) 427, 836
BstMBI GATC 4 cut(s) 193, 551, 975, 997
BstMWI GCNNNNNNNGC 3 cut(s) 407, 641, 989
BstNI CCWGG 2 cut(s) 191, 324
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 5 cut(s) 189, 282, 300, 322, 951
BstSFI CTRYAG 2 cut(s) 535, 639
BstV1I GCAGC 2 cut(s) 553, 830
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 2 cut(s) 224, 410
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 384, 485
Cac8I GCNNGC 2 cut(s) 393, 571
CaiI CAGNNNCTG 1 cut(s) 55
CfoI GCGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 458
CviAII CATG 5 cut(s) 16, 250, 666, 719, 828
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 2 cut(s) 74, 752
DpnI GATC 4 cut(s) 195, 553, 977, 999
DpnII GATC 4 cut(s) 193, 551, 975, 997
Eam1104I CTCTTC 3 cut(s) 152, 351, 423
EarI CTCTTC 3 cut(s) 152, 351, 423
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 189, 322
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 5 cut(s) 19, 253, 669, 722, 831
FalI AAGNNNNNCTT 2 cut(s) 562, 594
FatI CATG 5 cut(s) 15, 249, 665, 718, 827
FbaI TGATCA 2 cut(s) 975, 997
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 2 cut(s) 567, 844
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 2 cut(s) 567, 844
FspBI CTAG 2 cut(s) 374, 740
GlaI GCGC 1 cut(s) 390
GluI GCNGC 2 cut(s) 567, 844
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 224, 410
HapII CCGG 4 cut(s) 221, 284, 302, 952
HhaI GCGC 1 cut(s) 391
Hin1II CATG 5 cut(s) 19, 253, 669, 722, 831
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HindIII AAGCTT 2 cut(s) 81, 492
HinfI GANTC 3 cut(s) 334, 442, 723
HpaII CCGG 4 cut(s) 221, 284, 302, 952
HphI GGTGA 2 cut(s) 338, 1007
Hpy166II GTNNAC 2 cut(s) 163, 531
Hpy188I TCNGA 3 cut(s) 447, 551, 1002
Hpy188III TCNNGA 1 cut(s) 694
Hpy8I GTNNAC 2 cut(s) 163, 531
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 6 cut(s) 181, 395, 569, 846, 875, 945
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 641, 989
HpyF3I CTNAG 2 cut(s) 74, 752
HpySE526I ACGT 1 cut(s) 746
Hsp92II CATG 5 cut(s) 19, 253, 669, 722, 831
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 2 cut(s) 975, 997
Kzo9I GATC 4 cut(s) 193, 551, 975, 997
LguI GCTCTTC 1 cut(s) 351
Lsp1109I GCAGC 2 cut(s) 553, 830
LweI GCATC 1 cut(s) 644
MaeI CTAG 2 cut(s) 374, 740
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 5 cut(s) 277, 295, 714, 742, 811
MalI GATC 4 cut(s) 195, 553, 977, 999
MboI GATC 4 cut(s) 193, 551, 975, 997
MboII GAAGA 5 cut(s) 55, 139, 338, 427, 440
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 4 cut(s) 185, 207, 256, 396
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 7 cut(s) 153, 235, 238, 372, 421, 703, 767
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 2 cut(s) 255, 818
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 4 cut(s) 221, 284, 302, 952
MspR9I CCNGG 5 cut(s) 191, 284, 302, 324, 953
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 191, 324
MwoI GCNNNNNNNGC 3 cut(s) 407, 641, 989
NciI CCSGG 3 cut(s) 284, 302, 953
NdeII GATC 4 cut(s) 193, 551, 975, 997
NlaIII CATG 5 cut(s) 19, 253, 669, 722, 831
NlaIV GGNNCC 2 cut(s) 61, 360
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 915
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 2 cut(s) 334, 723
PflMI CCANNNNNTGG 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 2 cut(s) 568, 845
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PscI ACATGT 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 189, 322
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 189, 322
PspN4I GGNNCC 2 cut(s) 61, 360
PstNI CAGNNNCTG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 381
SalI GTCGAC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 255, 818
SatI GCNGC 2 cut(s) 567, 844
Sau3AI GATC 4 cut(s) 193, 551, 975, 997
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 5 cut(s) 191, 284, 302, 324, 953
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 1 cut(s) 644
SfcI CTRYAG 2 cut(s) 535, 639
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 4 cut(s) 185, 207, 256, 396
SspI AATATT 3 cut(s) 39, 609, 705
SspMI CTAG 2 cut(s) 374, 740
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 5 cut(s) 189, 282, 300, 322, 951
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 749
TaqI TCGA 4 cut(s) 413, 474, 530, 909
TaqII GACCGA 1 cut(s) 725
TasI AATT 4 cut(s) 185, 207, 256, 396
TfiI GAWTC 2 cut(s) 334, 723
Tru1I TTAA 2 cut(s) 255, 818
Tru9I TTAA 2 cut(s) 255, 818
TscAI CASTG 2 cut(s) 391, 492
TseI GCWGC 2 cut(s) 566, 843
TspDTI ATGAA 2 cut(s) 781, 876
TspRI CASTG 2 cut(s) 391, 492
Van91I CCANNNNNTGG 1 cut(s) 55
XapI RAATTY 2 cut(s) 185, 207
XceI RCATGY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 2 cut(s) 374, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.