RLG00000005858

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000475
Physical Location & Seq
Forward (+)
2392639 .. 2393675
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005858

Sequence Viewer

Length: 678 bp
ATGAAGAATCCGATAGAACTTGAGCAGATCAAGCCATGGTTTCTTGGCACCATTGGTATAATGGGATCAGCCACGAAAATCCTTTTGGGAAATCTCAATTTCATAACCTTCAATTTGATCACCTCCTTTCCTCTTTTCTGCATGATGAAGTTCATACCAAGATCACCTTATGACTTTTGGCAGCCTAGTTTCATCATGGAGGCATCATTGAAGCTAAGGCGGCTCATTACTCACCCTGGCACTCTGAAATCTTCTATACCTTCTATTCAAGATTGGACAATACGAGTACTCGATGCGTGGCTTTTTGACATGCTCAAGTTCCTCGTTGCACTCACATCTATCTACTCTGCTTCAATAATCTATACTACTACTAGTGTTGGCAAGTCAATGAGTCTCCGATATCTTGTTCAGAGTTCGATCACCAAAATTCGACATTGGTTAAGGGCAAGGCCTACAAATCTGTACCTGATCTTCCTACAATTTTTCGTTCCATTTGTGGCCGTTGCCAAATGGTTGGAGTTCAAAGCCTTGACAAATGTAGCTGTTGTTGTTTCCGTTTTAGAAGACAATATCAGAGGGCCTTTTGAAGCCTACTCAACCTTGTCGGAGCTAAGCAGAGGAAATAGACTAAGAGGATTAGTCAGGCTTGAAGAACTTTATACAAAAAACTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.9

Weight (kDa)

9.87

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 426
AfaI GTAC 2 cut(s) 288, 464
AgsI TTSAA 7 cut(s) 112, 211, 269, 354, 523, 587, 650
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 3 cut(s) 214, 542, 610
AluI AGCT 3 cut(s) 214, 542, 610
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 1 cut(s) 73
AoxI GGCC 3 cut(s) 449, 498, 578
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 4 cut(s) 112, 156, 224, 412
BanI GGYRCC 1 cut(s) 47
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbsI GAAGAC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 237
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 398
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 186, 372
BisI GCNGC 2 cut(s) 182, 221
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 2 cut(s) 183, 222
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 212, 283
BpiI GAAGAC 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 611
BpuEI CTTGAG 2 cut(s) 41, 299
BsaJI CCNNGG 2 cut(s) 35, 235
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 35, 235
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 3 cut(s) 451, 500, 580
BshNI GGYRCC 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 398
BsnI GGCC 3 cut(s) 451, 500, 580
Bsp143I GATC 6 cut(s) 27, 65, 117, 161, 417, 468
Bsp1720I GCTNAGC 1 cut(s) 611
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 220
BspANI GGCC 3 cut(s) 451, 500, 580
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 35, 235
BssMI GATC 6 cut(s) 27, 65, 117, 161, 417, 468
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 671
BstDEI CTNAG 3 cut(s) 215, 611, 629
BstDSI CCRYGG 1 cut(s) 35
BstKTI GATC 6 cut(s) 30, 68, 120, 164, 420, 471
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 6 cut(s) 27, 65, 117, 161, 417, 468
BstMWI GCNNNNNNNGC 2 cut(s) 31, 220
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 570
BstXI CCANNNNNNTGG 1 cut(s) 514
BsuRI GGCC 3 cut(s) 451, 500, 580
BtgI CCRYGG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 287, 463
CviAII CATG 4 cut(s) 36, 142, 196, 310
CviQI GTAC 2 cut(s) 287, 463
DdeI CTNAG 3 cut(s) 215, 611, 629
DpnI GATC 6 cut(s) 29, 67, 119, 163, 419, 470
DpnII GATC 6 cut(s) 27, 65, 117, 161, 417, 468
EaeI YGGCCR 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 451
Eco32I GATATC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 4 cut(s) 39, 145, 199, 313
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 4 cut(s) 35, 141, 195, 309
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 182, 221
Fsp4HI GCNGC 2 cut(s) 182, 221
FspBI CTAG 2 cut(s) 186, 372
GluI GCNGC 2 cut(s) 182, 221
HaeIII GGCC 3 cut(s) 451, 500, 580
Hin1II CATG 4 cut(s) 39, 145, 199, 313
HinfI GANTC 2 cut(s) 7, 391
HphI GGTGA 4 cut(s) 112, 156, 224, 412
Hpy188I TCNGA 6 cut(s) 12, 246, 398, 411, 575, 607
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 118, 270
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 2 cut(s) 141, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 220
HpyF3I CTNAG 3 cut(s) 215, 611, 629
Hsp92II CATG 4 cut(s) 39, 145, 199, 313
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 6 cut(s) 27, 65, 117, 161, 417, 468
LmnI GCTCC 1 cut(s) 607
LpnPI CCDG 4 cut(s) 222, 249, 479, 628
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 212, 283
MaeI CTAG 2 cut(s) 186, 372
MalI GATC 6 cut(s) 29, 67, 119, 163, 419, 470
MboI GATC 6 cut(s) 27, 65, 117, 161, 417, 468
MboII GAAGA 5 cut(s) 16, 243, 463, 575, 662
MluCI AATT 4 cut(s) 97, 112, 426, 479
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 495, 585
MnlI CCTC 7 cut(s) 133, 141, 193, 332, 569, 611, 626
MseI TTAA 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 31, 220
NcoI CCATGG 1 cut(s) 35
NdeII GATC 6 cut(s) 27, 65, 117, 161, 417, 468
NlaIII CATG 4 cut(s) 39, 145, 199, 313
NlaIV GGNNCC 1 cut(s) 49
NspI RCATGY 1 cut(s) 313
PceI AGGCCT 1 cut(s) 451
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 183, 222
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 578
RsaI GTAC 2 cut(s) 288, 464
RsaNI GTAC 2 cut(s) 287, 463
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 2 cut(s) 182, 221
Sau3AI GATC 6 cut(s) 27, 65, 117, 161, 417, 468
Sau96I GGNCC 1 cut(s) 578
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 237
SetI ASST 9 cut(s) 110, 125, 169, 216, 262, 468, 544, 602, 612
SfaNI GCATC 2 cut(s) 212, 283
SmlI CTYRAG 2 cut(s) 20, 314
SmoI CTYRAG 2 cut(s) 20, 314
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 4 cut(s) 97, 112, 426, 479
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 1 cut(s) 220
SspMI CTAG 2 cut(s) 186, 372
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 671
TaqI TCGA 3 cut(s) 291, 416, 430
TasI AATT 4 cut(s) 97, 112, 426, 479
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 17, 91, 142, 161, 181
TspGWI ACGGA 1 cut(s) 544
XapI RAATTY 1 cut(s) 426
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 2 cut(s) 186, 372
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.