Prupe.1G255600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000475
Physical Location & Seq
Reverse (-)
26616253 .. 26617631
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G255600.1

Sequence Viewer

Length: 888 bp
ATGGAGATGGAGAACAACCTTATGATGAAGAATCAGAAGCTGGAAGCCTTTGATATTCTCAGAAAAGCTCTTGTAATCTCTGCCAGAAACACCAACTTCTTCATCTTCACAATTCTCACCTCCCTTCCTCTCTTCTGTTTCTTGGTTTACTATGAATCTGTTCTCCAAAAATTCCTAGTTCAAATCTCAGAAATTCTAAAACAACCCCTTGATGACCTCGACTATGTTTGGATCATACCATTTGATACAACCAGAAAAATGAACAAAGAGTATACTGATGGGTTCATTCATCTGGGTCTTCTCTATCTGGTGCCTCTCCATCTCCTAGAGCTCAGCACCGTGCTCGTGGTTGTTGATTTGGCATCAAAGATGTACACAGAAGAGAGACCATTGATGACTCTCAAGGAGATGCTACATATACCCTTAGACAAAACAAGACTGAAGGGCACTTTTATAACATCTCTCTATTTCCTTGTCTTCTCAACTTGTGCTTTACTTGGATTGATATGGTTAGCAACAACATACTTTGTTGTATTCAAAGGCGCAATGTATGATTTGTTCTTTGCTGTATGGTGTGGGCCATCATTTGCAGCATTGCTAGCAATTTATTTGGCATGGAGTGCTGTGTGGAATGGGAGTCTTGTGATTTCAGTGTTGGAGGGGACATATGGCATCAAGGCATTTGCTCTAGCAATATATTTTAGCAGTGGGAGTGAGTGGAGAGGGATTCTTTTGATGCTTATGTTCTTTGCTTGGGAAATTAGCTTGTTCTGCTTTGGGAATGTGGTGAAATGGGTCGCCTGCACGATATATTTCTGCGATTGCAAGAACCGGGCTTTAGAGAAGAGGTTGATGATGAAGGGTACAACAGGTGAAAGCTGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

33.9

Weight (kDa)

6.81

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 272
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 170, 192
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 2 cut(s) 374, 865
AgsI TTSAA 2 cut(s) 182, 538
AluBI AGCT 5 cut(s) 40, 68, 331, 765, 879
AluI AGCT 5 cut(s) 40, 68, 331, 765, 879
Alw21I GWGCWC 2 cut(s) 333, 345
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 2 cut(s) 170, 192
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 3 cut(s) 109, 799, 884
AsuNHI GCTAGC 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 1 cut(s) 344
BbsI GAAGAC 2 cut(s) 290, 469
Bbv12I GWGCWC 2 cut(s) 333, 345
BbvI GCAGC 1 cut(s) 602
BccI CCATC 3 cut(s) 272, 327, 589
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 4 cut(s) 176, 326, 599, 689
BisI GCNGC 1 cut(s) 591
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 833
BmsI GCATC 4 cut(s) 371, 399, 681, 726
BmtI GCTAGC 1 cut(s) 602
BpiI GAAGAC 2 cut(s) 290, 469
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 379
Bse3DI GCAATG 2 cut(s) 552, 593
BseMI GCAATG 2 cut(s) 552, 593
BseMII CTCAG 3 cut(s) 73, 201, 346
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 787
BshFI GGCC 1 cut(s) 580
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 2 cut(s) 333, 345
BsiSI CCGG 1 cut(s) 832
BslFI GGGAC 1 cut(s) 676
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 1 cut(s) 379
Bsp1286I GDGCHC 3 cut(s) 333, 345, 449
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 1 cut(s) 231
Bsp1720I GCTNAGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 3 cut(s) 72, 200, 345
BspLI GGNNCC 1 cut(s) 312
BspOI GCTAGC 1 cut(s) 602
BspPI GGATC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 552, 593
BsrGI TGTACA 1 cut(s) 372
BssMI GATC 1 cut(s) 231
BssNAI GTATAC 1 cut(s) 273
BssSI CACGAG 1 cut(s) 344
Bst1107I GTATAC 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 3 cut(s) 137, 375, 839
BstAPI GCANNNNNTGC 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 600, 802
BstDEI CTNAG 4 cut(s) 59, 187, 332, 424
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 3 cut(s) 599, 620, 771
BstSCI CCNGG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 602
BstV2I GAAGAC 2 cut(s) 290, 469
BstZ17I GTATAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 657, 712
Cac8I GCNNGC 2 cut(s) 600, 802
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 373, 864
CviAII CATG 1 cut(s) 615
CviJI RGCY 9 cut(s) 40, 47, 68, 331, 580, 765, 836, 879, 885
CviKI_1 RGCY 9 cut(s) 40, 47, 68, 331, 580, 765, 836, 879, 885
CviQI GTAC 2 cut(s) 373, 864
DdeI CTNAG 4 cut(s) 59, 187, 332, 424
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eam1104I CTCTTC 3 cut(s) 137, 375, 839
EarI CTCTTC 3 cut(s) 137, 375, 839
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 1 cut(s) 618
FaqI GGGAC 1 cut(s) 676
FatI CATG 1 cut(s) 614
FauNDI CATATG 1 cut(s) 667
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 591
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 591
FspBI CTAG 4 cut(s) 176, 326, 599, 689
GlaI GCGC 1 cut(s) 544
GluI GCNGC 1 cut(s) 591
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 832
HhaI GCGC 1 cut(s) 545
Hin1II CATG 1 cut(s) 618
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 5 cut(s) 31, 155, 397, 637, 727
HpaII CCGG 1 cut(s) 832
HphI GGTGA 3 cut(s) 109, 799, 884
Hpy166II GTNNAC 3 cut(s) 148, 273, 375
Hpy188I TCNGA 3 cut(s) 36, 62, 190
Hpy8I GTNNAC 3 cut(s) 148, 273, 375
HpyAV CCTTC 3 cut(s) 134, 436, 853
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 590, 804, 825
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 620, 771
HpyF3I CTNAG 4 cut(s) 59, 187, 332, 424
Hsp92II CATG 1 cut(s) 618
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 8 cut(s) 26, 97, 265, 278, 293, 814, 845, 855
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 4 cut(s) 371, 399, 681, 726
MaeI CTAG 4 cut(s) 176, 326, 599, 689
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 8 cut(s) 40, 91, 97, 124, 290, 392, 469, 856
MhlI GDGCHC 3 cut(s) 333, 345, 449
MluCI AATT 5 cut(s) 111, 170, 192, 603, 759
MlyI GAGTC 2 cut(s) 391, 646
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 7 cut(s) 130, 138, 227, 324, 652, 716, 840
MroXI GAANNNNTTC 1 cut(s) 159
MspI CCGG 1 cut(s) 832
MspR9I CCNGG 1 cut(s) 833
MwoI GCNNNNNNNGC 3 cut(s) 599, 620, 771
NciI CCSGG 1 cut(s) 833
NdeI CATATG 1 cut(s) 667
NdeII GATC 1 cut(s) 231
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 1 cut(s) 618
NlaIV GGNNCC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 31, 155, 727
PkrI GCNGC 1 cut(s) 592
PleI GAGTC 2 cut(s) 391, 645
PpsI GAGTC 2 cut(s) 391, 645
PsiI TTATAA 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 578
PsrI GAACNNNNNNTAC 2 cut(s) 542, 574
PstNI CAGNNNCTG 1 cut(s) 40
RsaI GTAC 2 cut(s) 374, 865
RsaNI GTAC 2 cut(s) 373, 864
SacI GAGCTC 1 cut(s) 333
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 2 cut(s) 391, 646
ScrFI CCNGG 1 cut(s) 833
SduI GDGCHC 3 cut(s) 333, 345, 449
SfaNI GCATC 4 cut(s) 371, 399, 681, 726
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 5 cut(s) 111, 170, 192, 603, 759
SspMI CTAG 4 cut(s) 176, 326, 599, 689
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 831
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 219
TasI AATT 5 cut(s) 111, 170, 192, 603, 759
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 3 cut(s) 31, 155, 727
TscAI CASTG 2 cut(s) 657, 712
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 7 cut(s) 41, 91, 168, 274, 275, 278, 872
TspRI CASTG 2 cut(s) 657, 712
XapI RAATTY 2 cut(s) 170, 192
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 4 cut(s) 176, 326, 599, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.