FvH4_4g34761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32344548 .. 32345642
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34761.t1

Sequence Viewer

Length: 903 bp
ATGGAGAACTCGAGAGAGGAGAAGAAGCCTATGTTTCTCGGCATCTTTGGTATAATCAGAGCAGCCATAGAACTCCCTTTCATCAATCCCAGTTTCATTGCCTTCACATTCATCACATACCTTCCTCTATTTTGCATAATGATAATACCAAAGTTGCTGTTTGAGCGTACGAGACTCAGGGAGGCATTGCTGCAGCTAGAACAGCTCAGTTCCCACTGCAACATACTCATATCTATTACCTCATGGCTTCTAAATGGCACCATTAGAGTTGGCATTGTTCAAATTTCCGAGCTGATCACCTTCCTGGTGACAGTCACAGTCATTGATTCTGCTTCAACAATATATAAGGCCGGAGCTGGGAGGTCAATTGGTGTCCGAGACCTCTTACGAAACTCGTTCAGAGATAGGTGGGATAACTCTTTCCTAGTGTACATTGTCATGTACTTGCTCTCAACCATATCTTTGGATGCTGTTCTCCTTTATGGTACTGCAGGTCCGTTGCGCTCGTTAAGAAATGACTGGGCGCCGCCCTTGCATTTCTTCACTCAGGTTGGGCTCTCTTTCGTGCGCGACGAGTTCAGTGCATGGTGGCAAGTGGCTCTGGTTGTTTCTGTTTTGGAGGAGGACAAGTTACAATTTGATGCCTTCTTTACATCAGCAAAGTTGAGAAAAGGAAACAGGTTCACAGGTTTTGTTTTGATGCTTCTCTATTTTGGTTGGTGTTCCTTGCCGTACCTCTTGCGGTTGAAGAGATGGAGTTTTACTAGTGGAGTTGCATATGCTTTTGTTGATAGAGGCTTGTTCTGTTTGGGGGAGGTTATGAATTGGGTTGCTTGCACCATTTATTACCATGACTGCAAGAATCGCCAAACGTGGGAGGAGGTTATTGCCAAAGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.57

Weight (kDa)

8.5

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 482
AccB1I GGYRCC 2 cut(s) 257, 523
AccII CGCG 1 cut(s) 570
AciI CCGC 2 cut(s) 527, 742
AcsI RAATTY 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 5 cut(s) 169, 431, 443, 487, 734
AfiI CCNNNNNNNGG 2 cut(s) 357, 874
AgsI TTSAA 3 cut(s) 281, 336, 748
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 4 cut(s) 196, 205, 292, 356
AluI AGCT 4 cut(s) 196, 205, 292, 356
Alw26I GTCTC 2 cut(s) 166, 372
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 62, 190, 193
ApoI RAATTY 1 cut(s) 282
AspLEI GCGC 3 cut(s) 504, 526, 570
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 289, 319
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 494
BanI GGYRCC 2 cut(s) 257, 523
BanII GRGCYC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 74, 177, 205
BccI CCATC 1 cut(s) 747
BceAI ACGGC 1 cut(s) 715
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 166, 372
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 3 cut(s) 197, 425, 765
BfmI CTRYAG 2 cut(s) 191, 489
BfoI RGCGCY 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 4 cut(s) 63, 191, 194, 527
BlsI GCNGC 4 cut(s) 64, 192, 195, 528
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 2 cut(s) 259, 525
BmrFI CCNGG 1 cut(s) 305
BmrI ACTGGG 2 cut(s) 84, 529
BmsI GCATC 4 cut(s) 51, 457, 631, 690
BmuI ACTGGG 2 cut(s) 84, 529
BsaHI GRCGYC 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 874
Bse1I ACTGG 2 cut(s) 90, 524
Bse3DI GCAATG 2 cut(s) 96, 185
BseBI CCWGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 2 cut(s) 357, 874
BseMI GCAATG 2 cut(s) 96, 185
BseMII CTCAG 3 cut(s) 190, 220, 560
BseNI ACTGG 2 cut(s) 90, 524
BseRI GAGGAG 3 cut(s) 32, 635, 893
BseXI GCAGC 3 cut(s) 74, 177, 205
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 2 cut(s) 257, 523
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 351
BsiWI CGTACG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 357, 874
BsmAI GTCTC 2 cut(s) 166, 372
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 558
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 2 cut(s) 527, 742
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 3 cut(s) 189, 219, 559
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 2 cut(s) 259, 525
BspMAI CTGCAG 2 cut(s) 195, 493
BspMI ACCTGC 1 cut(s) 482
BspT107I GGYRCC 2 cut(s) 257, 523
BspTNI GGTCTC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 96, 185
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 2 cut(s) 90, 524
BssMI GATC 1 cut(s) 294
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 313, 319
Bst6I CTCTTC 1 cut(s) 743
BstACI GRCGYC 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 835
BstDEI CTNAG 3 cut(s) 176, 206, 546
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 3 cut(s) 504, 526, 570
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 2 cut(s) 166, 372
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 4 cut(s) 163, 202, 532, 864
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 2 cut(s) 191, 489
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 3 cut(s) 74, 177, 205
BstXI CCANNNNNNTGG 1 cut(s) 463
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 472
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 214, 586
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 835
CfoI GCGC 3 cut(s) 504, 526, 570
Cfr13I GGNCC 1 cut(s) 494
Csp6I GTAC 5 cut(s) 168, 430, 442, 486, 733
CviAII CATG 4 cut(s) 243, 439, 585, 851
CviQI GTAC 5 cut(s) 168, 430, 442, 486, 733
DdeI CTNAG 3 cut(s) 176, 206, 546
DinI GGCGCC 1 cut(s) 525
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 743
EarI CTCTTC 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 558
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
FaeI CATG 4 cut(s) 246, 442, 588, 854
FatI CATG 4 cut(s) 242, 438, 584, 850
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 63, 191, 194, 527
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 4 cut(s) 63, 191, 194, 527
FspBI CTAG 3 cut(s) 197, 425, 765
GlaI GCGC 3 cut(s) 503, 525, 569
GluI GCNGC 4 cut(s) 63, 191, 194, 527
GsaI CCCAGC 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 351
HhaI GCGC 3 cut(s) 504, 526, 570
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 4 cut(s) 246, 442, 588, 854
Hin6I GCGC 3 cut(s) 502, 524, 568
HinP1I GCGC 3 cut(s) 502, 524, 568
HinfI GANTC 3 cut(s) 174, 326, 862
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 289, 319
Hpy166II GTNNAC 2 cut(s) 430, 684
Hpy188I TCNGA 4 cut(s) 59, 289, 377, 401
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 430, 684
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 4 cut(s) 112, 131, 310, 655
HpyCH4III ACNGT 2 cut(s) 313, 319
HpyCH4IV ACGT 1 cut(s) 872
HpyCH4V TGCA 9 cut(s) 135, 193, 219, 491, 535, 584, 776, 837, 858
HpyF10VI GCNNNNNNNGC 4 cut(s) 163, 202, 532, 864
HpyF3I CTNAG 3 cut(s) 176, 206, 546
HpySE526I ACGT 1 cut(s) 872
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 4 cut(s) 246, 442, 588, 854
HspAI GCGC 3 cut(s) 502, 524, 568
KasI GGCGCC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 3 cut(s) 74, 177, 205
LweI GCATC 4 cut(s) 51, 457, 631, 690
MaeI CTAG 3 cut(s) 197, 425, 765
MaeII ACGT 1 cut(s) 872
MaeIII GTNAC 3 cut(s) 307, 313, 630
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 3 cut(s) 34, 532, 760
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 4 cut(s) 282, 366, 635, 823
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 1 cut(s) 168
MseI TTAA 2 cut(s) 509, 901
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 163, 202, 532, 864
NarI GGCGCC 1 cut(s) 524
NdeI CATATG 1 cut(s) 778
NdeII GATC 1 cut(s) 294
NlaIII CATG 4 cut(s) 246, 442, 588, 854
NlaIV GGNNCC 2 cut(s) 259, 525
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 307, 313
PaeR7I CTCGAG 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PfeI GAWTC 2 cut(s) 326, 862
Pfl23II CGTACG 1 cut(s) 167
PkrI GCNGC 4 cut(s) 64, 192, 195, 528
PleI GAGTC 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 303
PspLI CGTACG 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 259, 525
PspPI GGNCC 1 cut(s) 494
PstI CTGCAG 2 cut(s) 195, 493
RsaI GTAC 5 cut(s) 169, 431, 443, 487, 734
RsaNI GTAC 5 cut(s) 168, 430, 442, 486, 733
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 2 cut(s) 509, 901
SatI GCNGC 4 cut(s) 63, 191, 194, 527
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 4 cut(s) 51, 457, 631, 690
SfcI CTRYAG 2 cut(s) 191, 489
SfoI GGCGCC 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 494
SlaI CTCGAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 4 cut(s) 282, 366, 635, 823
SsiI CCGC 2 cut(s) 527, 742
SspDI GGCGCC 1 cut(s) 523
SspMI CTAG 3 cut(s) 197, 425, 765
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 313, 319
TaiI ACGT 1 cut(s) 875
TaqI TCGA 1 cut(s) 11
TasI AATT 4 cut(s) 282, 366, 635, 823
TatI WGTACW 2 cut(s) 429, 441
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 2 cut(s) 326, 862
Tru1I TTAA 2 cut(s) 509, 901
Tru9I TTAA 2 cut(s) 509, 901
TscAI CASTG 2 cut(s) 221, 586
TseFI GTSAC 2 cut(s) 307, 313
TseI GCWGC 3 cut(s) 62, 190, 193
Tsp45I GTSAC 2 cut(s) 307, 313
TspDTI ATGAA 4 cut(s) 70, 85, 100, 836
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 221, 586
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 10
XspI CTAG 3 cut(s) 197, 425, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.